CF504468

Overview
NameCF504468
Unique NameCF504468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11169 contig Csv1_Contig11169:2..335. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504468 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.658e-15
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  166 MKVIDKIQEKVASDKGVFSFEFFPPKTEDGVENLFERMD 282
            MKVI+KIQE  A  + VFSFE+FPPKTE+G++NLFERMD
Sbjct:    1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMD 39          

HSP 2 Score: 38.5058 bits (88), Expect = 1.658e-15
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  284 RMVAHNPAFCDITWGAG 334
            RMVAH P FCDITWGAG
Sbjct:   40 RMVAHGPNFCDITWGAG 56          
BLAST of CF504468 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 3.638e-15
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 1
Query:  166 MKVIDKIQEKVASDKGVFSFEFFPPKTEDGVENLFERMD 282
            MKVIDKIQ      K  FSFEFFPPKTEDGV+NLFERMD
Sbjct:    1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMD 39          

HSP 2 Score: 36.965 bits (84), Expect = 3.638e-15
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  284 RMVAHNPAFCDITWGAG 334
            RMVA+ P FCDITWGAG
Sbjct:   40 RMVAYGPTFCDITWGAG 56          
BLAST of CF504468 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.981e-15
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query:  166 MKVIDKIQEKVASDKGVFSFEFFPPKTEDGVENLFERMD 282
            MKVI+KI E     +  FSFE+FPPKTE+GVENLFERMD
Sbjct:    1 MKVIEKILEAAGDGRTAFSFEYFPPKTEEGVENLFERMD 39          

HSP 2 Score: 39.6614 bits (91), Expect = 7.981e-15
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  284 RMVAHNPAFCDITWGAG 334
            RMVAH P+FCDITWGAG
Sbjct:   40 RMVAHGPSFCDITWGAG 56          
BLAST of CF504468 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.478e-14
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query:  166 MKVIDKIQEKVASDKGVFSFEFFPPKTEDGVENLFERMD 282
            MKV+DKI+      +  FSFEFFPPKTEDGVENLFERMD
Sbjct:    1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMD 39          

HSP 2 Score: 34.6538 bits (78), Expect = 6.478e-14
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  284 RMVAHNPAFCDITWGAG 334
            R+V++ P FCDITWGAG
Sbjct:   40 RLVSYGPTFCDITWGAG 56          
The following BLAST results are available for this feature:
BLAST of CF504468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MTHR_ORYSJ1.658e-1571.79Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_ARATH3.638e-1576.92Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_MAIZE7.981e-1569.23Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR1_ARATH6.478e-1471.79Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-957 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504468 ID=CF504468; Name=CF504468; organism=Citrus sinensis; type=EST; length=335bp
CACACCCTCATCCCACCTCACACACCCACTCTCTTTCACTTTCATCTCGC
ATCCATTCTTTCCATTTTTCTTTTTCATAAATCACCCTCGCAGATCTGAA
CTCAACCGACAACTCACTCGTAAACGACCTGTCGGTGGCAGCAGTAGCTA
CTCTCCGAACCAAAAATGAAGGTAATAGACAAGATTCAAGAGAAAGTAGC
CTCCGACAAGGGCGTCTTCTCCTTCGAATTCTTCCCGCCGAAGACGGAAG
ATGGCGTCGAGAACTTGTTCGAGCGGATGGACCCGTATGGTGGCCCACAA
CCCGGCATTCTGCGACATCACTTGGGGGGCGGGTG
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