CF504471

Overview
NameCF504471
Unique NameCF504471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2144 contig Csv1_Contig2144:15..418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.289e-22
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  126 SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSEN 338
            +NG VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT                G KAKTNFPLPSEN
Sbjct:   19 TNG-VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSEN 88          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.780e-21
Identity = 47/68 (69.12%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  141 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSENVT 344
            KEVHFRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G+KAKTNFPLP E+ T
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTT 96          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.193e-21
Identity = 47/67 (70.15%), Postives = 49/67 (73.13%), Query Frame = 3
Query:  138 VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSEN 338
            VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT                G KAKTNFP P+EN
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTEN 88          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  117 TGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            T  ++   KE+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                GAKAKTNFP
Sbjct:   13 TNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  129 NGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSEN 338
            NG VKE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFP+ S +
Sbjct:   20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSS 89          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  123 NSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLP 329
            N +G  KE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFPLP
Sbjct:   18 NGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 42/68 (61.76%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  126 SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLP 329
            S    +EVH+RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                G KAKTNFP P
Sbjct:    3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.517e-16
Identity = 43/69 (62.32%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  117 TGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 323
            T   NG    V +RGVRKRPWGRYAAEIRDP KKSRVWLGTFDT                GAKAKTNFP
Sbjct:   12 TNEGNG----VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.593e-16
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  126 SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 326
            + G VKE  +RGVRKRPWGR+AAEIRDP KKSRVWLGTFD+                G KAKTNFP+
Sbjct:   18 AGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPI 84          
BLAST of CF504471 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.834e-16
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  117 TGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 320
            T + +   KE+ +RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                G KAKTNF
Sbjct:   19 THHESNAAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
The following BLAST results are available for this feature:
BLAST of CF504471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ERF4_NICSY4.289e-2271.83Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF80_ARATH2.780e-2169.12Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC6.193e-2170.15Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF78_ARATH3.757e-1860.87Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF82_ARATH6.409e-1860.00Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF3_TOBAC1.093e-1760.87Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF81_ARATH1.428e-1761.76Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH3.517e-1662.32Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF83_ARATH4.593e-1659.70Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF79_ARATH7.834e-1657.35Ethylene-responsive transcription factor 8 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-960 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504471 ID=CF504471; Name=CF504471; organism=Citrus sinensis; type=EST; length=405bp
TTCCTTTTATGTTTTGTCACTCGCTCAAAACAACAAACACTACCCACTTG
AAATAAAAATATAATACGGAAATAATATGGCGCCGAGAGAGAAGGCGTCG
GGACCTGTAAAAGTTAACCGGAAACAGTAACGGTATTGTTAAAGAGGTGC
ATTTTAGGGGCGTTAGAAAGAGGCCGTGGGGTCGATATGCAGCCGAGATT
AGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTTGGAACCTTCGACACCGC
TGAAGAAGCCGCTCGGGCCTACGACGCTGCTGCTAGAGAATTTCGCGGCG
CCAAGGCTAAAACAAACTTCCCCTTGCCTTCTGAAAATGTAACCAACAAA
ATTAGTCACAACAATATCAACATCAACAATAATAACCAGAGCCCCCAGCC
AAAGT
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