CF504472

Overview
NameCF504472
Unique NameCF504472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.083e-53
Identity = 94/120 (78.33%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 SFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENA 360
            + GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVVYPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K EPLITMDTPEE+ +
Sbjct:   17 AMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKS 136          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.397e-49
Identity = 88/118 (74.58%), Postives = 104/118 (88.14%), Query Frame = 1
Query:    7 GRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENA 360
            GRFVVEKN+L+VTSPE I+GVYECA+GNFGVPQYGG++ G VVYPK NQKACK FD+ ++SF+SR  GLPTF+LVDRGDCYFTLKAWNAQ+ GAA ILVAD++ E LITMD PE+E +
Sbjct:   23 GRFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETS 140          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 4.969e-47
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 1
Query:   10 RFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEE 354
            RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG++ GTVVYPK NQK+CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+
Sbjct:   25 RFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEED 139          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.969e-47
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 1
Query:   10 RFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEE 354
            RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG++ GTVVYPK NQK+CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+
Sbjct:   25 RFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEED 139          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.014e-44
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 SFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEE 354
            S  RFVVEKNSL VTSPEKIKG ++ AIGNFG+PQYGG++ G VVYPK N K CK FD    SFKSRPG LPT LL+DRG C+F LK WNAQK GA+A+LVADD  EPLITMDTPEE+
Sbjct:   20 STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCKDFDS---SFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEED 134          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.102e-29
Identity = 62/114 (54.39%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   10 RFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEE 351
            RFVVEK S+ V +PE+++  ++ +I NFG+P YGG LIG+VVYP +    C  F +   +FK +    PT LL+DRG CYF LKAW+AQ+ GAAA+LVAD+  EPL+TMD+PEE
Sbjct:   27 RFVVEKESISVLNPEEMRSKHDGSIANFGLPDYGGFLIGSVVYPDSKTDGCSAFGK---TFKPK-FPRPTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEE 136          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 FGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEE 351
            FGRF+VEK+S+ + +P  ++  ++ AI NFGVP YGG +IG+VVY       C  FD+   +FK +    PT L++DRG+CYF LK WN Q+ G AA+LVAD+  EPLITMD+PEE
Sbjct:   24 FGRFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDK---TFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEE 135          
BLAST of CF504472 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.525e-24
Identity = 55/116 (47.41%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   10 RFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEEN 357
            RF VEK+SL V +  ++   ++ AI NFG+P+YGG +IG+VVY   +   C  F++   +F ++    P  LL+DRG C F LK WN Q+ GAAA+L+AD+  EPLITMDTP++E+
Sbjct:   27 RFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFNK---TFNTK-SPYPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDED 138          
The following BLAST results are available for this feature:
BLAST of CF504472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR1_ARATH2.083e-5378.33Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH1.397e-4974.58Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR4_ARATH4.969e-4773.91Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH4.969e-4773.91Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA3.014e-4472.03Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR7_ARATH6.102e-2954.39Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH1.041e-2851.72Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH4.525e-2447.41Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-961 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504472 ID=CF504472; Name=CF504472; organism=Citrus sinensis; type=EST; length=362bp
AGTTTTGGAAGATTTGTTGTGGAGAAAAATAGCTTGAAAGTGACATCCCC
AGAGAAAATCAAAGGAGTTTATGAATGTGCAATTGGGAATTTTGGGGTTC
CTCAATATGGAGGAACTTTAATTGGTACCGTGGTTTATCCAAAAGCCAAT
CAAAAGGCTTGTAAGGGTTTTGATGAAGTTGATCTTTCCTTCAAGTCAAG
GCCTGGAGGATTACCCACTTTTCTCCTTGTTGATCGAGGAGATTGTTACT
TCACCTTGAAGGCCTGGAATGCGCAAAAAGGTGGAGCTGCTGCTATTCTT
GTGGCAGATGATAAGACTGAACCTTTGATTACCATGGACACCCCTGAAGA
AGAGAATGCAGA
back to top