CF504477

Overview
NameCF504477
Unique NameCF504477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10885 contig Csv1_Contig10885:8..316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH_ARATH (S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.930e-25
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   91 TEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            +EI S+KMF GYNKR+KHFS TLGCSM F IYF       +K PVLYWLSGLTCTDENFI KSGAQRAAS  G
Sbjct:    6 SEIGSTKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSHKSPVLYWLSGLTCTDENFIIKSGAQRAASTHG 78          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: ESTD_RAT (S-formylglutathione hydrolase OS=Rattus norvegicus GN=Esd PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.978e-15
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   76 METKPTEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            ME K  +ISS+K FGG  K F+H S  L C M F IY         K P LYWLSGLTCT++NFI+KSG Q+AAS  G
Sbjct:    1 MELK--QISSNKCFGGLQKVFEHSSVELKCKMKFAIYLPPQAESA-KCPALYWLSGLTCTEQNFISKSGCQQAASEHG 75          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: ESTD_BOVIN (S-formylglutathione hydrolase OS=Bos taurus GN=ESD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   94 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            ++SSSK FGG  K F+H S  L C M F +Y         K PVLYWLSGLTCT++NFI+KSG  +AAS  G
Sbjct:    5 QVSSSKCFGGLQKVFEHDSVELKCKMKFAVYLPPKAETG-KCPVLYWLSGLTCTEQNFISKSGYHQAASEHG 75          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: ESTD_MOUSE (S-formylglutathione hydrolase OS=Mus musculus GN=Esd PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   94 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            +ISS++ FGG  K F+H S  L C M F +Y         K P LYWLSGLTCT++NFI+KSG Q+AAS  G
Sbjct:    5 QISSNRCFGGLQKVFEHSSVELKCKMRFAVYLPPQAESG-KCPALYWLSGLTCTEQNFISKSGYQQAASEHG 75          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: ESTD_HUMAN (S-formylglutathione hydrolase OS=Homo sapiens GN=ESD PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.387e-14
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   94 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            +ISS+K FGG  K F+H S  L C M F +Y         K P LYWLSGLTCT++NFI+KSG  ++AS  G
Sbjct:    5 QISSNKCFGGLQKVFEHDSVELNCKMKFAVYLPPKAETG-KCPALYWLSGLTCTEQNFISKSGYHQSASEHG 75          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: ESTD_PIG (S-formylglutathione hydrolase OS=Sus scrofa GN=ESD PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   94 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEG 309
            ++SS+K FGG  K F+H S  L C M F IY         K P LYWLSGLTCT++NFI KSG  +AAS  G
Sbjct:    5 QLSSNKCFGGLQKVFEHDSVELKCKMKFAIYLPPKAETG-KCPALYWLSGLTCTEQNFITKSGYHQAASEHG 75          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECO57 (S-formylglutathione hydrolase frmB OS=Escherichia coli O157:H7 GN=frmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSASLKCEMNVGVYLPPKAAGE-KLPVLYWLSGLTCNEQNFITKSGVQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOLI (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain K12) GN=frmB PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  115 FGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:   10 FGGWQNMYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_ECODH (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain K12 / DH10B) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  115 FGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:   10 FGGWQNMYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
BLAST of CF504477 vs. ExPASy Swiss-Prot
Match: SFGH1_SHISS (S-formylglutathione hydrolase frmB OS=Shigella sonnei (strain Ss046) GN=frmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   97 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS 300
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANE-KLPVLYWLSGLTCNEQNFITKSGMQRYAA 70          
The following BLAST results are available for this feature:
BLAST of CF504477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SFGH_ARATH6.930e-2572.60S-formylglutathione hydrolase OS=Arabidopsis thali... [more]
ESTD_RAT4.978e-1555.13S-formylglutathione hydrolase OS=Rattus norvegicus... [more]
ESTD_BOVIN1.448e-1454.17S-formylglutathione hydrolase OS=Bos taurus GN=ESD... [more]
ESTD_MOUSE3.226e-1452.78S-formylglutathione hydrolase OS=Mus musculus GN=E... [more]
ESTD_HUMAN9.387e-1451.39S-formylglutathione hydrolase OS=Homo sapiens GN=E... [more]
ESTD_PIG1.226e-1352.78S-formylglutathione hydrolase OS=Sus scrofa GN=ESD... [more]
SFGH1_ECO578.786e-1247.06S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOLI1.148e-1150.00S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECODH1.148e-1150.00S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_SHISS1.499e-1147.06S-formylglutathione hydrolase frmB OS=Shigella son... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-966 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504477 ID=CF504477; Name=CF504477; organism=Citrus sinensis; type=EST; length=309bp
CACTCTTTAATCTGCTGAAAGAACAAAGATCGTACACACACAGGGCGAGC
TCAACACAATCAATCACAGAGAAAAATGGAGACGAAGCCGACAGAGATAA
GCAGTTCTAAGATGTTCGGTGGATACAACAAAAGATTCAAGCATTTCAGT
ACAACACTGGGCTGCTCCATGAATTTCCACATCTACTTCCCTCCTTCTTC
TTCTCCATCCTACAAATTCCCTGTGCTTTACTGGCTCTCTGGTCTTACCT
GCACTGATGAAAATTTTATAGCTAAGTCAGGAGCTCAACGTGCTGCTTCC
GCTGAAGGT
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