CF504482

Overview
NameCF504482
Unique NameCF504482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length334
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:409..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.536e-31
Identity = 67/87 (77.01%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDVIHPLKVSLEDLYNGTSKKLSLSRNVI                    QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD
Sbjct:  117 EDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 203
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.118e-29
Identity = 62/87 (71.26%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDV+HPLKVSLEDL+ GT+KKLSLSRNVI                    QG+GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD
Sbjct:  119 EDVVHPLKVSLEDLFTGTTKKLSLSRNVICSKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 205
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.764e-28
Identity = 61/87 (70.11%), Postives = 64/87 (73.56%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDV+HPLKVSLEDLYNGTSKKLSLSRNV+                    QGSGMKVSIR LGP MIQQMQHPCNECKGTGE I+DKD
Sbjct:  119 EDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKD 205
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.764e-28
Identity = 61/87 (70.11%), Postives = 64/87 (73.56%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDV+HPLKVSLE+LYNGTSKKLSLSRNVI                    QGSGMKVSIR LGP MIQQMQHPCN+CKGTGE INDKD
Sbjct:   98 EDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKD 184
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.842e-25
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDV+HPLKVSLED+Y GT KKLSLSRN +                    QGSGMKVSIR LGP MIQQMQH CNECKGTGETIND+D
Sbjct:  119 EDVVHPLKVSLEDVYLGTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETINDRD 205
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.941e-23
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            EDV+HPLKVSLED+Y GT+KKLSLSR  +                    QGSGMK+SIR  GP M+QQ+QH CN+CKGTGETIND+D
Sbjct:  120 EDVVHPLKVSLEDVYLGTTKKLSLSRKALCSKCNGKGSKSGASMKCGGCQGSGMKISIRQFGPGMMQQVQHACNDCKGTGETINDRD 206
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KD
Sbjct:  114 EDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KD
Sbjct:  114 EDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KD
Sbjct:  114 EDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
[Close]
BLAST of CF504482 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   72 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 332
            ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KD
Sbjct:  114 EDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
The following BLAST results are available for this feature:
BLAST of CF504482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DNJH_CUCSA6.536e-3177.01DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH_ATRNU6.118e-2971.26DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNJH2_ALLPO6.764e-2870.11DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNJH1_ALLPO6.764e-2870.11DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNAJ3_ARATH1.842e-2565.52Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH2.941e-2358.62Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJA2_RAT2.411e-1747.13DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE2.411e-1747.13DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_HUMAN2.411e-1747.13DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNJA2_BOVIN2.411e-1747.13DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-971 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504482 ID=CF504482; Name=CF504482; organism=Citrus sinensis; type=EST; length=334bp
TATTCCAATCCTTCTTCGGTGGCAGCCCATTTGGTGGTGGGAGCAGCAGA
GGAAGAAGGCAAAGGAGGGGAGAGGATGTAATCCATCCCCTCAAGGTTTC
TTTGGAGGATCTCTACAATGGGACATCTAAGAAGCTCTCGCTCTCCCGCA
ATGTAATCTGCACCAAGTGCAAAGGGAAGGGGTCTAAGTCAGGTGCATCA
ATGAAATGTTCTGGCTGCCAGGGATCTGGAATGAAAGTTTCAATAAGACA
CCTTGGCCCCTCTATGATTCAACAAATGCAGCATCCTTGCAATGAGTGCA
AGGGTACTGGAGAAACAATCAATGACAAGGATCG
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