CF504486

Overview
NameCF504486
Unique NameCF504486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:136..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.196e-32
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 1
Query:   37 LVSSVILLLCCXXXXXXXXXXFDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQR 378
            ++SSV+L++            FD+SNPIR+VS DGLR+ E SV Q++GQ+RH LSFARF  RYGK Y++VEEMKLRF+ F +NLDLIRSTN KGLSY+LG+N+FAD +W+EFQR
Sbjct:    6 ILSSVVLVVLVAASAAANIG-FDESNPIRMVS-DGLREVEESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQR 117          
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.323e-31
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   19 MARPVQLVSSVILLLCCXXXXXXXXXXFDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRH 381
            M+  + L SS++L+L            FD+SNPI++VS D L + E +V+Q++GQ+RH LSF+RF  RYGK Y+SVEEMKLRF+ F +NLDLIRSTN KGLSY+L LN+FAD +W+EFQR+
Sbjct:    1 MSVKLNLSSSILLILFAAAASKEIG--FDESNPIKMVS-DNLHELEDTVVQILGQSRHVLSFSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRY 118          
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.566e-24
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  100 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ 375
            F DSNPIR V+       E++VL  +G+ RHAL FARFA RYGK YES  E++ RF  FS++L+ +RSTN KGL YRLG+N+F+D SWEEFQ
Sbjct:   27 FADSNPIRPVTDRAASTLESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQ 118          
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  100 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ 375
            F DSNPIR V+       E++V   +G+ R AL FARFA RYGK YES  E+  RF  FS++L L+RSTN KGLSYRLG+N+FAD SWEEF+
Sbjct:   25 FADSNPIRPVTDRAASALESTVFAALGRTRDALRFARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFR 116          
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  100 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ 375
            FDDSNPIR V+       E++V+  +G+ R AL FARFA R+GK Y    E++ RF  FS++L+L+RSTN +GL YRLG+N+FAD SWEEFQ
Sbjct:   28 FDDSNPIRSVTDHAASALESTVIAALGRTRDALRFARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQ 119          
BLAST of CF504486 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  100 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRH 381
            F D NPIR V      + E  +LQV+GQ R ALSFARFA R+ K Y+SVEE+K RF  F  NL +IRS N KGLSY+LG+N+F D +W+EF++H
Sbjct:   25 FADKNPIRQVVFPD--ELENGILQVVGQTRSALSFARFAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKH 116          
The following BLAST results are available for this feature:
BLAST of CF504486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ALEU_ARATH1.196e-3261.40Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH1.323e-3156.20Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ALEU_HORVU1.566e-2458.70Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP2_MAIZE1.015e-2358.70Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ORYC_ORYSJ3.858e-2355.43Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC2.500e-2256.38Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-975 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504486 ID=CF504486; Name=CF504486; organism=Citrus sinensis; type=EST; length=381bp
CAGACACAATCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGT
CATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCT
TCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGAC
TTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTC
CTTTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGG
AGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGA
TCTACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGC
TGACTGGAGCTGGGAAGAGTTCCAAAGGCAC
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