CF504487

Overview
NameCF504487
Unique NameCF504487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504487 vs. ExPASy Swiss-Prot
Match: DUS3L_ORYSJ (tRNA-dihydrouridine synthase 3-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.142e-31
Identity = 80/189 (42.33%), Postives = 102/189 (53.97%), Query Frame = 2
Query:    2 FSHDLDSFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQ------EGVVDSNNSHATN---GNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNAGVSVLEEDT 541
            FSHD+D++ AQKP DLEG CPF + +  CPYGL CRF GTH+D+   +G+   L +  E+N LNKD+QKLLWKNK KFPKA A++K LGL    KSK     D ++      +G  D N     N      C     + +D SE  P +      V  RP KK+K E      S E D  G   L  +T
Sbjct:  113 FSHDIDAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVE------SDEIDKHGAGTLNTNT 292          
BLAST of CF504487 vs. ExPASy Swiss-Prot
Match: DUS3L_ARATH (tRNA-dihydrouridine synthase 3-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 2
Query:    2 FSHDLDSFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAK---SKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNAGV---SVLEEDT 541
            F+HD+++FKAQK DD+EG+CPF++S   C YGL+CRF G+HR   D+ G+++  ++ SE+N  NK+ Q+LLWKNKM F  ADAKLKSLGLLG AK   +  ++  +K Q G+   N + AT        + +   E      +P        RP+KKAKSE+ +N  S  GD  GV     LEE+T
Sbjct:  129 FNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGSHR---DITGNSDD-KEKSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAKKSNAAEEITAEKTQNGM---NGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKN--SKTGDVGGVYDGVKLEEET 305          
The following BLAST results are available for this feature:
BLAST of CF504487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DUS3L_ORYSJ1.142e-3142.33tRNA-dihydrouridine synthase 3-like OS=Oryza sativ... [more]
DUS3L_ARATH2.544e-3144.09tRNA-dihydrouridine synthase 3-like OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-976 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504487 ID=CF504487; Name=CF504487; organism=Citrus sinensis; type=EST; length=541bp
ATTCAGCCATGACTTAGATAGCTTCAAGGCTCAGAAACCGGATGATCTAG
AAGGTGAATGCCCGTTTTTGAGTTCTGAAGGGCCGTGTCCTTATGGTTTG
GCCTGCAGATTTTCGGGTACTCATAGAGATGTTGTTGATGTTGCTGGTTC
TACAAACACGCTGCGGAAAAGCTCTGAGGTGAATGGTTTGAACAAAGATG
TGCAGAAACTTTTGTGGAAGAATAAAATGAAATTCCCAAAAGCTGATGCC
AAACTCAAATCTCTTGGGCTTCTGGGTCCGGCCAAGTCGAAAATGAAAGT
GATGGAAGATAAAGAGCAAGAAGGTGTAGTTGATTCTAATAATTCTCATG
CTACCAACGGAAATGGTTGCATGAAAGGAACTGGTGACTCAGTGGATGAA
TCTGAATGCTCACCCTGTGTTCCAGAAGAGAATAATATTGTCAATGATAG
GCCATTGAAGAAAGCAAAATCTGAAAATGTTGAAAATTGTTGCTCTGTTG
AAGGGGACAATGCAGGTGTGAGTGTATTGGAGGAAGATACT
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