CF504493

Overview
NameCF504493
Unique NameCF504493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504493 vs. ExPASy Swiss-Prot
Match: NCBP1_ARATH (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 2.831e-62
Identity = 107/146 (73.29%), Postives = 132/146 (90.41%), Query Frame = 2 
Query:    2 FVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQ 439
            FVQE+L+REVRLSYWDK+KQSIENA ALEELLPPK GPNF YS+E+G+E++EE  LSAEL+ KVK +QTAR++IVW+EE++YP+HG  VT+ +VVQTLLDIGSKSFTHL+TVLERYGQV SK+CPD+DKQ+ML+ +VS +WKNN Q
Sbjct:  445 FVQEILQREVRLSYWDKIKQSIENATALEELLPPKAGPNFMYSLEEGKEKTEEQQLSAELSRKVKEKQTARDMIVWIEETIYPVHGFEVTLTIVVQTLLDIGSKSFTHLVTVLERYGQVFSKLCPDNDKQVMLLSQVSTYWKNNVQ 590
[Close]
BLAST of CF504493 vs. ExPASy Swiss-Prot
Match: NCBP1_ORYSJ (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.541e-51
Identity = 93/146 (63.70%), Postives = 120/146 (82.19%), Query Frame = 2 
Query:    2 FVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQ 439
            FVQEVLERE+RLSY+DK+KQSIE+A  LEELLPPK GPNF+Y  ++G+E ++ H LS EL   V+GR+T  +II WV+E + P++G    + VV QTLLDIGSKSFTHLITVLERYGQ+ISK+CP+ + QL+L++EVS +WKN+TQ
Sbjct:  444 FVQEVLEREIRLSYFDKIKQSIEDAVELEELLPPKAGPNFRYHSDEGKESTDGHRLSKELVAMVRGRKTQGDIISWVDEKIIPVNGAKFALDVVSQTLLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQ 589
The following BLAST results are available for this feature:
BLAST of CF504493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCBP1_ARATH2.831e-6273.29Nuclear cap-binding protein subunit 1 OS=Arabidops... [more]
NCBP1_ORYSJ6.541e-5163.70Nuclear cap-binding protein subunit 1 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-982 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504493 ID=CF504493; Name=CF504493; organism=Citrus sinensis; type=EST; length=444bp
GTTTGTTCAGGAGGTCTTGGAAAGAGAAGTCCGCCTGTCTTACTGGGACA
AAGTTAAGCAGAGCATTGAGAATGCACCTGCTTTAGAAGAGTTGCTTCCT
CCCAAAGGCGGTCCAAACTTCAAATATAGTATGGAAGATGGTAGAGAAAG
AAGCGAAGAACATGCACTCTCTGCGGAACTGACAAACAAGGTGAAAGGAA
GGCAAACTGCCCGGGAAATAATTGTGTGGGTAGAAGAAAGTGTGTATCCT
ATTCATGGGCTGGGAGTCACCATCAAAGTGGTTGTGCAAACACTACTTGA
TATTGGATCTAAAAGTTTCACTCATTTGATCACTGTATTGGAGAGATACG
GGCAAGTCATATCAAAAATATGCCCTGATCATGATAAGCAATTGATGCTG
ATAGAAGAAGTGAGTTTGTTTTGGAAGAACAATACCCAGAATGC
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