CF504496 | Citrus Genome Database

Overview


Name	CF504496
Unique Name	CF504496
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	587

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 2.526e-95
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS
Sbjct:  127 VEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 252

HSP 2 Score: 83.1889 bits (204), Expect = 2.526e-95
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            +VVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVT
Sbjct:   90 KVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVT 131

HSP 3 Score: 60.077 bits (144), Expect = 2.526e-95
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFFCINGPEIMSK
Sbjct:  253 GKTLIARAVANETGAFFFCINGPEIMSK 280

HSP 4 Score: 57.7658 bits (138), Expect = 6.768e-13
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    +  V ++D+GG+     +++E V+ P+ HP+ F+  G+ P KG+L YGPPG
Sbjct:  468 RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524

HSP 5 Score: 35.039 bits (79), Expect = 6.768e-13
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  + GPE+++
Sbjct:  526 GKTLLAKAIANECQANFISVKGPELLT 552

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.591e-95
Identity = 117/126 (92.86%), Postives = 122/126 (96.83%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLD+VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS
Sbjct:  127 VEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 252

HSP 2 Score: 83.1889 bits (204), Expect = 5.591e-95
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            +VVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVT
Sbjct:   90 KVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVT 131

HSP 3 Score: 60.077 bits (144), Expect = 5.591e-95
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFFCINGPEIMSK
Sbjct:  253 GKTLIARAVANETGAFFFCINGPEIMSK 280

HSP 4 Score: 57.3806 bits (137), Expect = 8.789e-13
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    +  V ++D+GG+     +++E V+ P+ HP+ F+  G+ P KG+L YGPPG
Sbjct:  468 RETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524

HSP 5 Score: 35.039 bits (79), Expect = 8.789e-13
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  + GPE+++
Sbjct:  526 GKTLLAKAIANECQANFISVKGPELLT 552

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.029e-93
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GN+FDAYLKPYF EAYRPVRKGDLFLVRGGMRS+EFKVIETDP EYCVVAPDTEIFCEGEP++REDE RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS
Sbjct:  128 IEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 253

HSP 2 Score: 78.9518 bits (193), Expect = 1.029e-93
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            +VVRSNLRVRLGDV+SVHQC DVKYG RVHILP+DDTIEGV+
Sbjct:   91 KVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVS 132

HSP 3 Score: 60.077 bits (144), Expect = 1.029e-93
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFFCINGPEIMSK
Sbjct:  254 GKTLIARAVANETGAFFFCINGPEIMSK 281

HSP 4 Score: 57.7658 bits (138), Expect = 5.211e-13
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    +  V ++D+GG+     +++E V+ P+ HP+ F+  G+ P KG+L YGPPG
Sbjct:  469 RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 525

HSP 5 Score: 35.4242 bits (80), Expect = 5.211e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  527 GKTLLAKAIANECQANFISIKGPELLT 553

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.968e-93
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++GL G+LFDA+LKPYF EAYRP+RKGD FLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS
Sbjct:  128 IEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 253

HSP 2 Score: 82.4185 bits (202), Expect = 2.968e-93
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            +VVRSNLRVRLGDVVSVHQC DVKYGKRVHILP+DDTIEG+T
Sbjct:   91 KVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGLT 132

HSP 3 Score: 60.077 bits (144), Expect = 2.968e-93
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFFCINGPEIMSK
Sbjct:  254 GKTLIARAVANETGAFFFCINGPEIMSK 281

HSP 4 Score: 53.9138 bits (128), Expect = 9.217e-12
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    +  V ++D+GG+     +++E V+ P+  P+ F+  G+ P KG+L YGPPG
Sbjct:  469 RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPG 525

HSP 5 Score: 35.039 bits (79), Expect = 9.217e-12
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  + GPE+++
Sbjct:  527 GKTLLAKAIANECQANFISVKGPELLT 553

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.450e-82
Identity = 97/127 (76.38%), Postives = 116/127 (91.34%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GGVRKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 75.8702 bits (185), Expect = 1.450e-82
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 1.450e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 55.0694 bits (131), Expect = 3.245e-12
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    +  + ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPNITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 3.245e-12
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 4.176e-82
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 76.2554 bits (186), Expect = 4.176e-82
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKRVH+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRVHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 4.176e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 56.9954 bits (136), Expect = 8.790e-13
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    + +V ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 8.790e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.441e-82
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 75.8702 bits (185), Expect = 5.441e-82
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 5.441e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 56.9954 bits (136), Expect = 8.790e-13
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    + +V ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 8.790e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 5.441e-82
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 75.8702 bits (185), Expect = 5.441e-82
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 5.441e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 56.9954 bits (136), Expect = 8.790e-13
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    + +V ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 8.790e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 213.772 bits (543), Expect = 5.441e-82
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 75.8702 bits (185), Expect = 5.441e-82
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 5.441e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 56.9954 bits (136), Expect = 8.790e-13
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    + +V ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 8.790e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

[Close]

BLAST of CF504496 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 213.772 bits (543), Expect = 5.441e-82
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 2

Query:  125 LKGLPGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 502
            ++G+ GNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+
Sbjct:  123 VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249

HSP 2 Score: 75.8702 bits (185), Expect = 5.441e-82
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   13 RVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT 138
            RVVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+T
Sbjct:   86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGIT 127

HSP 3 Score: 56.225 bits (134), Expect = 5.441e-82
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMSK 587
            GKTLIARAVANETGAFFF INGPEIMSK
Sbjct:  250 GKTLIARAVANETGAFFFLINGPEIMSK 277

HSP 4 Score: 56.9954 bits (136), Expect = 8.790e-13
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  329 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 499
            RE    + +V ++D+GG+     +++ELV+ P+ HP  F   G+ P KG+L YGPPG
Sbjct:  465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521

HSP 5 Score: 35.4242 bits (80), Expect = 8.790e-13
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3

Query:  504 GKTLIARAVANETGAFFFCINGPEIMS 584
            GKTL+A+A+ANE  A F  I GPE+++
Sbjct:  523 GKTLLAKAIANECQANFISIKGPELLT 549

The following BLAST results are available for this feature:

BLAST of CF504496 vs. ExPASy Swiss-Prot

BLAST of CF504496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155


Match Name	E-value	Identity	Description
CD48E_ARATH	2.526e-95	93.65	Cell division control protein 48 homolog E OS=Arab...	[more]
CD48A_ARATH	5.591e-95	92.86	Cell division control protein 48 homolog A OS=Arab...	[more]
CD48D_ARATH	1.029e-93	91.27	Cell division control protein 48 homolog D OS=Arab...	[more]
CDC48_CAPAN	2.968e-93	91.27	Cell division cycle protein 48 homolog OS=Capsicum...	[more]
TERA_DANRE	1.450e-82	76.38	Transitional endoplasmic reticulum ATPase OS=Danio...	[more]
TERA_XENLA	4.176e-82	75.59	Transitional endoplasmic reticulum ATPase OS=Xenop...	[more]
TERA_XENTR	5.441e-82	75.59	Transitional endoplasmic reticulum ATPase OS=Xenop...	[more]
TERA_RAT	5.441e-82	75.59	Transitional endoplasmic reticulum ATPase OS=Rattu...	[more]
TERA_MOUSE	5.441e-82	75.59	Transitional endoplasmic reticulum ATPase OS=Mus m...	[more]
TERA_HUMAN	5.441e-82	75.59	Transitional endoplasmic reticulum ATPase OS=Homo ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-985 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504496 ID=CF504496; Name=CF504496; organism=Citrus sinensis; type=EST; length=587bp
CCCCCGGGCTGCAGGGTCGTGAGGTCGAACTTGAGGGTTAGACTCGGAGA
TGTTGTTTCTGTGCACCAGTGCGCTGATGTCAAATACGGAAAGCGTGTGC
ACATATTACCTGTGGATGACACAATTGAAGGGGTTACCTGGAAATCTCTT
TGATGCATACTTGAAACCTTATTTCACGGAAGCTTATCGACCAGTGAGGA
AGGGTGATCTATTCCTTGTTAGAGGTGGAATGAGAAGTGTAGAGTTCAAG
GTTATTGAGACTGACCCTCCTGAATACTGTGTGGTTGCCCCTGATACTGA
GATCTTCTGTGAGGGAGAGCCAGTGAGAAGGGAAGATGAGAATCGATTAG
ATGAGGTTGGCTATGATGATGTTGGTGGGGTTAGAAAGCAGATGGCTCAG
ATTCGAGAATTAGTAGAACTTCCATTAAGGCACCCGCAGCTCTTTAAGTC
AATTGGTGTGAAGCCACCGAAAGGAATTTTGCTTTATGGACCTCCTGGAT
CTTGGGAAGACACTGATTGCCCGTGCTGTTGCAAATGAAACCGGTGCTTT
CTTCTTTTGTATAAATGGACCTGAGATCATGTCAAAA