CF504500

Overview
NameCF504500
Unique NameCF504500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6094 contig Csv1_Contig6094:12..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 2.816e-50
Identity = 92/130 (70.77%), Postives = 105/130 (80.77%), Query Frame = 2
Query:   29 MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHS 412
            M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+      R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WINSIGRSIVQHS
Sbjct:    1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHS 130          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: Y4775_DICDI (PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 400
            +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +     VK  +D    K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:   17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH3_MOUSE (Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 2
Query:   83 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  257 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 379          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: PKHH1_HUMAN (Pleckstrin homology domain-containing family H member 1 OS=Homo sapiens GN=PLEKHH1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPVAS-CLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 379
            E+SG+L K G  +KTW+RRWFVL+QG++ ++K  S V R  KP+G + + S C  V+G          F+L +  +T Y  ADS    E+WI
Sbjct:  580 EKSGYLLKMGSQVKTWKRRWFVLRQGQIMYYKSPSDVIR--KPQGQVDLNSRCQIVRG-----EGSQTFQLISEKKTYYLTADSPSLLEEWI 664          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH2_CERAE (Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 2
Query:   83 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTET----------MYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  +D   K   FEL           + +TE           +Y I A +++EK++WI SI  ++
Sbjct:  252 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVDDP-RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAV 374          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: PKHH2_MOUSE (Pleckstrin homology domain-containing family H member 2 OS=Mus musculus GN=Plekhh2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPV-ASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 379
            E+SG+L K    +KTW+RRWFVLK G+L ++K  S V R  KP+G I + ASC  ++G     NKQ   +L+T   T Y  ADS    E+WI
Sbjct:  704 EKSGYLLKMSVRVKTWKRRWFVLKGGELLYYKSPSDVIR--KPQGHIELSASCSILRGD----NKQ-TVQLATEKHTYYLTADSPNILEEWI 788          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH4_HUMAN (Cytohesin-4 OS=Homo sapiens GN=CYTH4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 2
Query:   83 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL----------------------STRTETMYFIADSEKEKEDWINSIGRSIVQ 406
            D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+    T   +PRG+IP+ + L+V+  +D   K +  EL                        + E+    A S +E++ WI SI  SI +
Sbjct:  252 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE---FTTDKEPRGIIPLEN-LSVQKVDDP-KKPFCLELYNPSCRGQKIKACKTDGDGRVVEGKHESYRISATSAEERDQWIESIRASITR 376          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH1_RAT (Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   83 DSTEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE          T+Y I A + +EKEDWI  I  +I
Sbjct:  253 DLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: CYH1_MOUSE (Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   83 DSTEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            D T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE          T+Y I A + +EKEDWI  I  +I
Sbjct:  253 DLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376          
BLAST of CF504500 vs. ExPASy Swiss-Prot
Match: PKHH2_HUMAN (Pleckstrin homology domain-containing family H member 2 OS=Homo sapiens GN=PLEKHH2 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPV-ASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 379
            E+SG+L K    +K+W+RRWFVLK G+L ++K  S V R  KP+G I + ASC  ++G     NKQ   +L+T   T Y  ADS    E+WI
Sbjct:  705 EKSGYLLKMSGKVKSWKRRWFVLKGGELLYYKSPSDVIR--KPQGHIELSASCSILRGD----NKQ-TVQLTTEKHTYYLTADSPNILEEWI 789          
The following BLAST results are available for this feature:
BLAST of CF504500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PH1_ARATH2.816e-5070.77Pleckstrin homology domain-containing protein 1 OS... [more]
Y4775_DICDI3.252e-1441.84PH domain-containing protein DDB_G0274775 OS=Dicty... [more]
CYH3_MOUSE3.976e-1236.72Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1[more]
PKHH1_HUMAN1.511e-1141.30Pleckstrin homology domain-containing family H mem... [more]
CYH2_CERAE2.577e-1133.59Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=... [more]
PKHH2_MOUSE3.366e-1145.65Pleckstrin homology domain-containing family H mem... [more]
CYH4_HUMAN4.396e-1132.31Cytohesin-4 OS=Homo sapiens GN=CYTH4 PE=1 SV=1[more]
CYH1_RAT7.498e-1136.43Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=... [more]
CYH1_MOUSE7.498e-1136.43Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=1 SV=1[more]
PKHH2_HUMAN9.792e-1144.57Pleckstrin homology domain-containing family H mem... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-989 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504500 ID=CF504500; Name=CF504500; organism=Citrus sinensis; type=EST; length=412bp
TTTGAAGCCAGCAAGTGATTTGACACAAATGGGTAGCCTCTGGCGAGCCA
TATCGGGCCAAACAAACCAGCTCAGCGACTACGACAGCACTGAGTTCTGG
TCAAACCCCGAACGGTCCGGCTGGTTGACCAAACAAGGCGAGTACATAAA
AACTTGGCGTCGCCGTTGGTTCGTTTTAAAACAAGGCAAGCTCTTTTGGT
TCAAAGAATCTACTGTCACCCGCGCCTCCAAGCCACGTGGCGTTATTCCA
GTGGCCTCCTGCCTCACCGTCAAGGGAGCCGAAGATGTGTTGAATAAACA
GTACGCTTTTGAGCTGAGTACGAGGACTGAGACGATGTACTTCATCGCTG
ATTCCGAGAAGGAGAAAGAGGACTGGATCAACTCCATCGGACGCTCCATA
GTGCAGCACTCC
back to top