CF504505

Overview
NameCF504505
Unique NameCF504505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 5.973e-49
Identity = 103/145 (71.03%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LWIILVASCAAL+IQSLAANLGVVTG                                KHLAEHCR EY KVPNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQQYG+RKLEFLIAFLVFT+A
Sbjct:   73 LWIILVASCAALVIQSLAANLGVVTG--------------------------------KHLAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLVFTIA 185          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.126e-47
Identity = 102/145 (70.34%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LWIILVASCAAL+IQSLAANLGVVTG                                KHLAE CR EY KVPNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRKLEFLIAFLVFT+A
Sbjct:   81 LWIILVASCAALVIQSLAANLGVVTG--------------------------------KHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRKLEFLIAFLVFTIA 193          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM2_HUMAN (Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.092e-24
Identity = 61/147 (41.50%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LWI+L+A+   L++Q LAA LGVVTG+                                HLAE C  +YPKVP  ILW++ E+AI+  D+ EVIG+A A+N+L   +IP+W GVL+T   T + L L +YG+RKLE    FL+  MA
Sbjct:  105 LWILLLATLVGLLLQRLAARLGVVTGL--------------------------------HLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMA 219          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM2_MOUSE (Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.650e-24
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LW++L+A+   L++Q LAA LGVVTG+                                HLAE C  +YPKVP  ILW++ E+AI+  D+ EVIG+A A+N+L   ++P+W GVL+T   T + L L +YG+RKLE    FL+  MA
Sbjct:  105 LWVLLLATIVGLLLQRLAARLGVVTGL--------------------------------HLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMA 219          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM2_RAT (Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LW++L+A+   L++Q LAA LGVVTG+                                HLAE C  +YPKVP  ILW++ E+AI+  D+ EVIG+A A+N+L   ++P++ GVL+T   T + L L +YG+RKLE    FL+  MA
Sbjct:  105 LWVLLLATIVGLLLQRLAARLGVVTGL--------------------------------HLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLYGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMA 219          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM1_DICDI (Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.139e-22
Identity = 58/147 (39.46%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LW++  ++     +Q LA+ LGVVTG                                KHLAEHCR +YPK P  +LW++ E+AI+  DI EVIGTA AL +L    IP+W GVL T   T   L L++YG+RKLE     L+  MA
Sbjct:  109 LWVLFWSTVIGFWLQMLASRLGVVTG--------------------------------KHLAEHCREQYPKTPRLLLWLMTELAIIGSDIQEVIGTAIALQILSNGHIPLWAGVLFTAADTFTFLFLEKYGIRKLEAFFCSLIAIMA 223          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.062e-21
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            +W+++ A+   L+IQ L+A LGV TG                                +HLAE CR EYP     +LW++AEIA++  DI EVIG+A A+ +L    +P+W GV++T     I L L+ YG+RKLE + A L+ TMA
Sbjct:   87 IWLLMWATAIGLLIQLLSARLGVATG--------------------------------RHLAELCREEYPTWARMVLWIMAEIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALDCFIFLFLENYGIRKLEAVFAILIATMA 201          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: MVL_DROME (Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.365e-21
Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LW++L A+   L++Q LAA LGVVTG+                                HLAE C  +Y ++P +ILW++ EIAI+  D+ EVIGTA A+ +L    +P+W GVL+T   T   L L +YG+RKLEFL   L+  MA
Sbjct:  112 LWVLLWATVLGLLMQRLAARLGVVTGL--------------------------------HLAEMCYRQYKRLPRWILWIMIEIAIIGSDMQEVIGTAIAIYLLSNKVVPLWGGVLITIVDTFTFLFLDKYGLRKLEFLFGTLITIMA 226          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM5_ARATH (Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.034e-21
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 435
            LW++L A+   L++Q L+A +GV TG                                +HLAE CR+EYP     +LW +AE+A++  DI EVIG+A AL +L +  +P+W+GV++T F   ++  L++ G+RKLE L A L+ TMA
Sbjct:  105 LWLLLWATLMGLLMQLLSARIGVATG--------------------------------RHLAEICRSEYPSWARILLWFMAEVALIGADIQEVIGSAIALQILTRGFLPIWVGVIITSFDCFLISYLEKCGMRKLEGLFAVLIATMA 219          
BLAST of CF504505 vs. ExPASy Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.882e-21
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 LWIILVASCAALIIQSLAANLGVVTGM*FVYQLHWLEIFFQYDQ*CISLYKFHFLLAGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTM 432
            LW+++ A+   L++Q L+A LGV TG                                +HLAE CR+EYP     +LWV+AE+A++  DI EVIG+A A+ +L    +P+W GV++T     + L L+ YG+RKLE + A L+ TM
Sbjct:   91 LWLLMWATAMGLLVQLLSARLGVATG--------------------------------RHLAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLFLENYGIRKLEAVFAVLIATM 204          
The following BLAST results are available for this feature:
BLAST of CF504505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
NRAM6_ARATH5.973e-4971.03Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
NRAM1_ARATH1.126e-4770.34Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
NRAM2_HUMAN5.092e-2441.50Natural resistance-associated macrophage protein 2... [more]
NRAM2_MOUSE6.650e-2440.14Natural resistance-associated macrophage protein 2... [more]
NRAM2_RAT7.352e-2339.46Natural resistance-associated macrophage protein 2... [more]
NRAM1_DICDI2.139e-2239.46Metal transporter nramp1 homolog OS=Dictyostelium ... [more]
NRAM4_ARATH1.062e-2137.41Metal transporter Nramp4 OS=Arabidopsis thaliana G... [more]
MVL_DROME2.365e-2139.46Protein Malvolio OS=Drosophila melanogaster GN=Mvl... [more]
NRAM5_ARATH4.034e-2136.73Metal transporter Nramp5 OS=Arabidopsis thaliana G... [more]
NRAM3_ARATH6.882e-2136.30Metal transporter Nramp3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-994 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504505 ID=CF504505; Name=CF504505; organism=Citrus sinensis; type=EST; length=440bp
CTCTGGATCATTTTAGTGGCTTCATGTGCGGCTCTTATAATTCAGTCTCT
AGCAGCCAATCTCGGGGTTGTCACGGGTATGTGATTTGTATACCAGCTAC
ATTGGTTAGAAATCTTCTTTCAATATGATCAGTGATGCATCAGTTTATAC
AAATTCCATTTCTTGCTTGCAGGAAAGCATTTGGCAGAGCACTGTAGAAA
TGAATACCCTAAGGTGCCGAACTTCATATTATGGGTTCTTGCTGAAATTG
CTATAGTCGCGTGTGACATACCAGAAGTGATCGGAACAGCCTTCGCATTG
AATATGCTCTTCAAAATTCCAGTGTGGATTGGTGTTCTTCTAACTGGGTT
CAGTACTTTGATTCTTCTGGCTTTGCAGCAATATGGGGTTAGGAAGCTTG
AATTTTTGATTGCTTTTCTTGTATTTACCATGGCCCGGAT
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