CF504507

Overview
NameCF504507
Unique NameCF504507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504507 vs. ExPASy Swiss-Prot
Match: SYH_LEPIN (Histidyl-tRNA synthetase OS=Leptospira interrogans GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  219 PPKGTRDFPPEDMRLRNWLFHNFQEGSRLFGFEEGDFPVLESEALFIRKAGEEIRD-QLY 395
            P KGTRDF PEDMRLRNW+F   +E    FG+EE D P+LES  L+  K+GEEI + QLY
Sbjct:   12 PYKGTRDFYPEDMRLRNWMFSVMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLY 71
[Close]
BLAST of CF504507 vs. ExPASy Swiss-Prot
Match: SYH_LEPIC (Histidyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  219 PPKGTRDFPPEDMRLRNWLFHNFQEGSRLFGFEEGDFPVLESEALFIRKAGEEIRD-QLY 395
            P KGTRDF PEDMRLRNW+F   +E    FG+EE D P+LES  L+  K+GEEI + QLY
Sbjct:   12 PYKGTRDFYPEDMRLRNWMFSVMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLY 71
[Close]
BLAST of CF504507 vs. ExPASy Swiss-Prot
Match: SYH_LEPBL (Histidyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=hisS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  219 PPKGTRDFPPEDMRLRNWLFHNFQEGSRLFGFEEGDFPVLESEALFIRKAGEEIRD-QLY 395
            P KGTRDF PE+MRLRNW+F   +E    FG+EE D P+LES  L+  K+GEEI + QLY
Sbjct:   12 PYKGTRDFYPEEMRLRNWMFSIMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLY 71
[Close]
BLAST of CF504507 vs. ExPASy Swiss-Prot
Match: SYH_LEPBJ (Histidyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=hisS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  219 PPKGTRDFPPEDMRLRNWLFHNFQEGSRLFGFEEGDFPVLESEALFIRKAGEEIRD-QLY 395
            P KGTRDF PE+MRLRNW+F   +E    FG+EE D P+LES  L+  K+GEEI + QLY
Sbjct:   12 PYKGTRDFYPEEMRLRNWMFSIMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLY 71
The following BLAST results are available for this feature:
BLAST of CF504507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SYH_LEPIN1.497e-1160.00Histidyl-tRNA synthetase OS=Leptospira interrogans... [more]
SYH_LEPIC1.497e-1160.00Histidyl-tRNA synthetase OS=Leptospira interrogans... [more]
SYH_LEPBL4.355e-1158.33Histidyl-tRNA synthetase OS=Leptospira borgpeterse... [more]
SYH_LEPBJ4.355e-1158.33Histidyl-tRNA synthetase OS=Leptospira borgpeterse... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-996 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504507 ID=CF504507; Name=CF504507; organism=Citrus sinensis; type=EST; length=396bp
CTGCGATTCACTCGTCACTCAGCTTTTACATGAAACCTCTATTCTTATCC
AACTCCTCTCTCTTTCCTCGCAAATTCACAGTCCCTAAAGAGTACTTACT
AAACCCTAGAAGCCTCTGTGCTCTTTCCTCCGCATCCAACCAAAATGGCG
GCAGGTCCGGTGCCCGGTCCCTCTCTCCGTCTCCGGTCTCCGACGACCTT
CAGAAAATCGATGTCAATCCTCCCAAGGGAACCCGTGACTTTCCGCCTGA
GGACATGCGACTTCGTAACTGGCTCTTTCACAATTTTCAGGAGGGTTCGC
GGCTTTTTGGTTTTGAAGAGGGTGATTTTCCGGTGTTAGAGTCGGAGGCC
CTCTTTATTAGAAAAGCTGGAGAGGAAATTCGAGACCAGTTATATT
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