CF504508

Overview
NameCF504508
Unique NameCF504508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig723 contig Csv1_Contig723:4..401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.520e-43
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.251e-42
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MP+ RIA+G PGE SHPD  KAA+AEF S +IFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL+
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLK 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.106e-42
Identity = 81/102 (79.41%), Postives = 93/102 (91.18%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MP+ RIA+G PGE SHPD  KAA+AEF SM+IFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L++
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVK 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.359e-41
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.997e-40
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI  IA+G+  E  HP ALKAALAEF S +IFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.587e-40
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI RIA+G+  E  HP ALKAA AEF S +IFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.690e-39
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI  IAIG P EA+ PDALKAALAEF S +IFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLR 102          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.208e-39
Identity = 82/102 (80.39%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   91 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLR 101          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.526e-35
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1
Query:   91 MPIYRIAIG-TPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 396
            MP   IAIG    E  HP+AL+AALAEF S +IFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLR 103          
BLAST of CF504508 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.318e-27
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  103 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 393
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L
Sbjct:    3 KLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITIL 99          
The following BLAST results are available for this feature:
BLAST of CF504508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TIP13_ARATH2.520e-4382.35Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_MAIZE1.251e-4282.35Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP12_ORYSJ8.106e-4279.41Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR2.359e-4181.37Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP11_ORYSJ1.997e-4081.37Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE7.587e-4080.39Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ARATH1.690e-3977.45Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP1_MEDSA2.208e-3980.39Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP12_ARATH2.526e-3571.84Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP21_MAIZE4.318e-2757.73Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-997 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504508 ID=CF504508; Name=CF504508; organism=Citrus sinensis; type=EST; length=398bp
AAACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCT
AAAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCT
ACAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTA
AAGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGG
CCAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCA
CGCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTT
GTAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGC
TGTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAG
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