CF504513

Overview
NameCF504513
Unique NameCF504513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length265
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig547 contig Csv1_Contig547:1..265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504513 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   56 QSGIYSCLNIDVSNGG-STMIDHSVSSAILDEFCTLKDANFQN-PSDCLM--NTFSSSQDVQSQITSASLADSQ 265
            Q  +Y+  NI +SN   S ++D  +S+ +LD+FC +KD +FQN PS CL+  N  S +QDVQSQITSAS ADSQ
Sbjct:  674 QQDLYASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNHPSGCLVGNNNTSFAQDVQSQITSASFADSQ 747
The following BLAST results are available for this feature:
BLAST of CF504513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFE_ARATH8.928e-1252.70Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-002 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504513 ID=CF504513; Name=CF504513; organism=Citrus sinensis; type=EST; length=265bp
CCACTGTAGCCTAAATTCCAGTGGATTGAGAGATTTGTCAGATGAGAGCA
ATAATCAAAGTGGGATATACAGCTGTCTTAACATTGATGTTAGTAATGGT
GGAAGTACAATGATTGATCATTCTGTATCTAGTGCCATTCTAGATGAATT
TTGTACATTGAAGGATGCTAATTTCCAAAATCCTTCAGATTGTTTAATGA
ACACTTTTAGCTCTAGCCAGGATGTCCAATCTCAGATTACTTCTGCAAGC
CTAGCAGATTCTCAG
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