CF504515

Overview
NameCF504515
Unique NameCF504515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:472..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.485e-30
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S ++  PC  G  YYGRG + + WNYNYG  G A+ +DLLN+P+ +  +  +AF+AAIW WMTP
Sbjct:  112 GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEW--PCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTP 230          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.536e-30
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G A+  DLLN+P+ +  +A +AF+AAIW WMT
Sbjct:  127 GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSA--TWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMT 244          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.443e-30
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP
Sbjct:   94 FATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTP 212          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.443e-30
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP
Sbjct:  116 FATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTP 234          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.747e-29
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC       +PC PG +YYGRG I +  NYNYG  G+A+K DL+N+P+ +  N T++F+ AIW WMTP
Sbjct:  121 GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTP 238          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.994e-29
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG  G+AL  D L +PE +   + +AF+ A+W WMTP
Sbjct:   91 FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQ-WPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTP 209          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.044e-28
Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +Y  PC PG  YYGRG + + WNYNYG  GEAL+ +LL +P+ +  +  L+F+ A+W WMTP
Sbjct:   44 FGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTP 161          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.181e-28
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S ++  PC PG +Y+GRG I I +NYNYGA G A+  +LLN+P+ +  +A ++F+ A+W WMT
Sbjct:   47 FGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQW--PCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMT 163          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.969e-27
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG CY  E     +YC  S ++  PC  G +YYGRG I I +NYNYG  G+A+  DL+N+P+ +  +A ++F+ A W WMTP
Sbjct:  106 GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQW--PCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTP 224          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.969e-27
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F TTG    + +E+ AFLA    +T+ G G  A  GP  WG CYN E++P+  YC   +   YPC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP
Sbjct:  114 FATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQ--WDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTP 231          
The following BLAST results are available for this feature:
BLAST of CF504515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI2_BRANA2.485e-3046.28Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH5.536e-3045.83Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_GOSHI9.443e-3047.11Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI9.443e-3047.11Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIX_PEA2.747e-2947.11Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI10_ORYSJ7.994e-2946.67Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_CARPA1.044e-2845.83Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHID_SOLLC5.181e-2846.22Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_VITVI1.969e-2745.45Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_THECC1.969e-2744.63Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-004 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504515 ID=CF504515; Name=CF504515; organism=Citrus sinensis; type=EST; length=387bp
ATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAG
GAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATA
TGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATG
AAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATAT
CCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATA
CTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGT
TGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCT
GCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCC
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