CF504525

Overview
NameCF504525
Unique NameCF504525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504525 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.894e-31
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 285
            AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  269 AGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363
[Close]
BLAST of CF504525 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.709e-29
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 285
            AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  263 AGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
[Close]
BLAST of CF504525 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.327e-11
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    1 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 285
            AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:  266 AGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360
The following BLAST results are available for this feature:
BLAST of CF504525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PDIA6_MEDSA2.894e-3170.53Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH2.709e-2968.42Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI1_DICDI3.327e-1136.84Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-014 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504525 ID=CF504525; Name=CF504525; organism=Citrus sinensis; type=EST; length=314bp
GCGGGTATAGTTGCGAGCTTAGATGCCTTGGTGAAGGAATTTGTTGCTGC
TAGCGGTGATGAGAAGAAGGCAGTCTTCTCAAAGATTGAACGGGGAGTTG
AGGTGCTTGAGGGTTCCACTGCCAGGCATGGGAAGATTTACTTGAAAGTT
GCAAAGAACTATATGGACAAAGGGAGTGATTATGCGAAGAAGGAAATTGA
TCGCCTCCAGCGTATGCTTGACAAGTCAATCAGCGCGGCAAAAGCGGACG
AATTCGTCCTCAAGAAAAATATTTTATCCACATTCACTTAATATGTGGGA
TTATGTTTTTTTAT
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