CF504526

Overview
NameCF504526
Unique NameCF504526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 3
Query:  120 KPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGL 293
            KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA FGKG+
Sbjct:   85 KPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGV 143          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.910e-17
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 3
Query:  144 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            PWL VGLGNPGK Y GTRHNVGFEM+D IAEAEGIS+SS+ FKA  GKG
Sbjct:   55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.593e-13
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  144 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            PWL +GLGNPG +Y GTRHN+GFEM+D  AE+ GI ++ VNFKA  G+G
Sbjct:   18 PWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQG 66          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  117 PKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            P  +  +  PWLI GLGNPG +Y+GTRHNVGFEMVD IA  EGI+++++  K+  G G
Sbjct:   55 PAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIG 112          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  141 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGL 293
            +PWL VGLGNPG++Y  TRHNVGF+M+D  A+++GIS++   FKA FG+G+
Sbjct:   59 NPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGM 109          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  144 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            PWLIVGLGNPG +Y+GTRHNVGFEM+D +A  EG+ ++++  KA  G G
Sbjct:   45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIG 93          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  144 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G G
Sbjct:   61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIG 109          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  144 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKG 290
            PWLIVGLGNPG +Y GTRHN+GFEM+D IA A  IS++++  KA  G G
Sbjct:   51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG 99          
BLAST of CF504526 vs. ExPASy Swiss-Prot
Match: PTH_THETN (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis GN=pth PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.543e-11
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  147 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGLFH-----------FLN-------DSINYFKLAL 338
            ++I GLGNPGK+Y GTRHNVGF ++DA+++  GI VS + FK+  G+G F            F+N       D++N++K+ L
Sbjct:    2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKPQTFMNLSGEALYDAVNFYKIPL 83          
The following BLAST results are available for this feature:
BLAST of CF504526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PTHC_ARATH1.943e-1976.27Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
PTHM_ORYSJ6.910e-1779.59Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
PTHM_ARATH1.593e-1363.27Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_ORYSJ6.054e-1355.17Chloroplastic group IIB intron splicing facilitato... [more]
CRS2L_ORYSJ1.033e-1258.82CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
CRS2B_ARATH1.033e-1261.22Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_MAIZE3.924e-1263.27Chloroplastic group IIB intron splicing facilitato... [more]
CRS2A_ARATH8.742e-1263.27Chloroplastic group IIB intron splicing facilitato... [more]
PTH_THETN2.543e-1141.46Peptidyl-tRNA hydrolase OS=Thermoanaerobacter teng... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-015 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504526 ID=CF504526; Name=CF504526; organism=Citrus sinensis; type=EST; length=398bp
TGAAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGG
TCGCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGA
AGAATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGC
TCATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACAC
AATGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATC
TGTGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTATTTCACT
TTCTTAACGATTCTATAAACTATTTTAAATTGGCTTTAATGTTTCACTCA
CAAAGTTAATAGTTATTGGTGAGAATTTTAAAACAATATCTACCAAAG
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