CF504529

Overview
NameCF504529
Unique NameCF504529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:1143..1614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.443e-53
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:   18 EANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

HSP 2 Score: 36.1946 bits (82), Expect = 1.443e-53
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MA+SSFKLEHPLERRQA
Sbjct:    1 MARSSFKLEHPLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.443e-53
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:   18 EANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

HSP 2 Score: 36.1946 bits (82), Expect = 1.443e-53
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MA+SSFKLEHPLERRQA
Sbjct:    1 MARSSFKLEHPLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.045e-52
Identity = 93/100 (93.00%), Postives = 99/100 (99.00%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ES+RIREKYPDRIPVIVE+AERSD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIF+FVKN LPPTAAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:   18 ESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

HSP 2 Score: 33.8834 bits (76), Expect = 2.045e-52
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQ 55
            MA SSFKLEHPLERRQ
Sbjct:    1 MANSSFKLEHPLERRQ 16
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.776e-51
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E+ RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:   18 EANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

HSP 2 Score: 33.113 bits (74), Expect = 3.776e-51
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MAKSSFKL+H LERRQA
Sbjct:    1 MAKSSFKLDHTLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.776e-51
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E+ RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:   18 EANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

HSP 2 Score: 33.113 bits (74), Expect = 3.776e-51
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MAKSSFKL+H LERRQA
Sbjct:    1 MAKSSFKLDHTLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.416e-51
Identity = 89/102 (87.25%), Postives = 99/102 (97.06%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365
            ESARIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG++
Sbjct:   18 ESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119

HSP 2 Score: 35.039 bits (79), Expect = 6.416e-51
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MA++SFKLEHPLERRQA
Sbjct:    1 MARTSFKLEHPLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.416e-51
Identity = 89/102 (87.25%), Postives = 99/102 (97.06%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365
            ESARIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG++
Sbjct:   18 ESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119

HSP 2 Score: 35.039 bits (79), Expect = 6.416e-51
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MA++SFKLEHPLERRQA
Sbjct:    1 MARTSFKLEHPLERRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.421e-50
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 368
            E+ARIREKYPDRIPVIVE+AE+SD+PDID+KKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKNILPPTAA+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:   18 EAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120

HSP 2 Score: 30.4166 bits (67), Expect = 1.421e-50
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MA SSFK EHPLE+RQA
Sbjct:    1 MAISSFKHEHPLEKRQA 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.805e-49
Identity = 91/101 (90.10%), Postives = 98/101 (97.03%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 362
            ES+RIREKYPDRIPVIVEKA +SD+PDIDKKKYLVPADLTVGQFVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct:   18 ESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118

HSP 2 Score: 26.5646 bits (57), Expect = 5.805e-49
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            MAKSSFK+ +PLE R +
Sbjct:    1 MAKSSFKISNPLEARMS 17
[Close]
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.710e-48
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 3 
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 368
            ES RIR KYP+R+PVIVEKA +SD+PDIDKKKYLVPADLT+GQFVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:   18 ESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120

HSP 2 Score: 25.409 bits (54), Expect = 3.710e-48
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2 
Query:    8 MAKSSFKLEHPLERRQA 58
            M K+SFKL +PLE R A
Sbjct:    1 MEKNSFKLSNPLEMRMA 17
The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8C_ORYSJ1.443e-5396.00Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI1.443e-5396.00Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ARATH2.045e-5293.00Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ3.776e-5194.00Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI3.776e-5194.00Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ6.416e-5187.25Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI6.416e-5187.25Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8D_ARATH1.421e-5089.32Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8A_ARATH5.805e-4990.10Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8B_ARATH3.710e-4886.41Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-018 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bp
AGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGA
GGCAGGCCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACC
AGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAA
AAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTG
GTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGT
CAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGG
AAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAAC
ACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAAC
TCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAA
CTGAGGGAGCACTTGGAAAGCAT
back to top