CF504536

Overview
NameCF504536
Unique NameCF504536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1368..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.913e-23
Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGED 318
            GPH FAVTRA+ G SC DVLRVMQHEP+LMFETLKHRA E+CGQ                 +           Q F +MPYLV  ++C L A+ N  G YYC+G+D
Sbjct:  614 GPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQH------------DDDSVVNAGVLANSLAQSFDNMPYLVSSTTCCLNALTNNNGFYYCSGDD 707          
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.362e-17
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEH 138
            GPHSFAVTRA+PGPSCGDVLRVMQH+PELMFETLKHRA+EY   ++
Sbjct:  601 GPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDN 646          
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPS---SCSLTAINNGGGLYYCN 309
            GPHSFAVTRA+PG S  DVLR MQHEPELMF+TLKHRAEE    +                            + FH+MPYL       S SL+A  +  G YYC+
Sbjct:  601 GPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMMHTKGGSEGENEEEEED----DEFNNVAASLDRSFHNMPYLATEQASPSNSLSAAISNLGFYYCD 702          
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.444e-14
Identity = 45/99 (45.45%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGL 297
            GP S+AVTRA+PGPS  DVLRVM HEPELMF+TLKHRAEE C  ++                           Q F+S PYLV   +      +NG GL
Sbjct:  610 GPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE-CDNDY-----------------TAGPLADMLAQSFNSTPYLVPGHATGSCGFSNGSGL 690          
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSC-SLTAINNGGGLYYCN 309
            GPH FAVTRA+ G S  DVLR MQHEPELMF+TLKHRAEE     +                           + F++MPYL + +S  +LTA  N  G+YYC+
Sbjct:  589 GPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEEPRNNNNKACGDKG---------NDKLVVASCLAKSFNNMPYLSMETSTNALTAAVNNLGVYYCD 683          
BLAST of CF504536 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.287e-12
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 120
            GPH FAVTRAM G S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  590 GPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE 629          
The following BLAST results are available for this feature:
BLAST of CF504536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SPE1_PEA4.913e-2350.00Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_SOYBN2.362e-1782.61Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE2_ARATH3.770e-1545.28Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_DIACA2.444e-1445.45Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_ARATH3.192e-1444.23Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE1_BRAJU2.287e-1282.50Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-025 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504536 ID=CF504536; Name=CF504536; organism=Citrus sinensis; type=EST; length=320bp
GGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCTTGTGG
GGATGTCCTCCGGGTGATGCAGCACGAGCCCGAGCTCATGTTTGAGACCC
TCAAACACCGTGCTGAGGAATATTGTGGACAGGAGCATGGTAGTAATGGT
GGGGATGGTGATACTGATGATTACGATCACGGCATGGCTAATAATTCTGC
TTTAGCTAGCAGCCTTGCTCAGTACTTTCACAGCATGCCATATCTTGTGG
TGCCATCCTCTTGTTCTTTGACTGCTATCAATAATGGTGGGGGGTTATAC
TATTGCAACGGGGAGGATTA
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