CF504542

Overview
NameCF504542
Unique NameCF504542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:691..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.399e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.316e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  230 PDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLK 271          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.316e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  230 PDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLK 271          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.719e-15
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDTSVERPL++L+S +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  228 PDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLK 269          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  233 PDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLK 274          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-15
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PDT++ERPL++LVS +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  231 PDTAIERPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLK 272          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLK
Sbjct:  232 PDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLK 273          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD SVERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  229 PDESVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLK 270          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD SVERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 PDLSVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLK 272          
BLAST of CF504542 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.001e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   45 PDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLK 170
            PD S+ERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLK
Sbjct:  231 PDESIERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLK 272          
The following BLAST results are available for this feature:
BLAST of CF504542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CHS2_CITSI2.399e-17100.00Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS3_RUTGR1.316e-1590.48Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS1_RUTGR1.316e-1590.48Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHSY_BETVE1.719e-1588.10Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_PETCR3.829e-1588.10Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_CHRAE3.829e-1585.71Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS2_DAUCA3.829e-1588.10Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_SECCE3.829e-1590.48Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHS1_HORVU3.829e-1590.48Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS2_SECCE5.001e-1588.10Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-031 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504542 ID=CF504542; Name=CF504542; organism=Citrus sinensis; type=EST; length=172bp
CTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGAC
ACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGAT
CCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTC
TCACTTTCCATTTGCTTAAAGA
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