CF504544

Overview
NameCF504544
Unique NameCF504544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:139..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75
The following BLAST results are available for this feature:
BLAST of CF504544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA3.857e-23100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA3.857e-23100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE3.857e-23100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE3.857e-23100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR3.857e-23100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL3.857e-23100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ3.857e-23100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH3.857e-23100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT3.857e-23100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT3.857e-23100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-033 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504544 ID=CF504544; Name=CF504544; organism=Citrus sinensis; type=EST; length=299bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCAAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCAGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCA
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