CF504546

Overview
NameCF504546
Unique NameCF504546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length231
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504546 vs. ExPASy Swiss-Prot
Match: CAP2_ARATH (Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 1.194e-11
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:    3 IDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGT 107
            IDEL+ FY WCK+ G+ARSSE+PEVQRIT KLL T
Sbjct:  334 IDELIAFYNWCKETGVARSSEYPEVQRITSKLLET 368

HSP 2 Score: 27.7202 bits (60), Expect = 1.194e-11
Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 1 
Query:  109 LDGFLKEMANRPKNPERIRXXXXXXXXXXXX---DMNEVKALP 228
            L+ F+++ A R K+PER                 DMNE+KALP
Sbjct:  369 LEEFVRDRAKRGKSPERKEIEAPPPVVEEEEPEPDMNEIKALP 411
The following BLAST results are available for this feature:
BLAST of CF504546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAP2_ARATH1.194e-1174.29Putative clathrin assembly protein At2g25430 OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-035 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504546 ID=CF504546; Name=CF504546; organism=Citrus sinensis; type=EST; length=231bp
TGATTGATGAGCTTGTGGGTTTCTATGGTTGGTGTAAGGATATCGGGATT
GCAAGATCATCTGAGTTCCCTGAAGTGCAGAGGATAACTGATAAGCTTTT
GGGGACACCTTGATGGCTTTTTGAAGGAAATGGCAAACAGGCCAAAGAAT
CCTGAAAGAATTAGGGAGGAGAAACTTCCTCCTAAGCAAGAACCAGAGCC
TGATATGAATGAGGTCAAGGCTCTTCCTGCA
back to top