CF504550

Overview
NameCF504550
Unique NameCF504550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504550 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  121 WTF*ERTTKQLLRKALDMSKNSS-----------SIKLTSDKTTSKQVIWENMQGLSDG--IPHLIYISREKRPKNPHHYKAGAMNVLTRVSG 360
            W   +R  ++L RK  D + +S            S    +D +T  +V+WEN  G+ D   +PH++YISREKRP   HHYKAGAMN L RVSG
Sbjct:  190 WEMTKREYEKLCRKVEDATGDSHLLGTDNELEAFSNTKPNDHSTIIKVVWENKGGVGDEKEVPHIVYISREKRPNYLHHYKAGAMNFLARVSG 282          
BLAST of CF504550 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  202 TSDKTTSKQVIWENMQGLSDG--IPHLIYISREKRPKNPHHYKAGAMNVLTRVSG 360
            ++D +T  +V+WEN  G+ D   +PH++YISREKRP + HHYKAGAMN L RVSG
Sbjct:  228 SNDHSTIVKVVWENKGGVGDEKEVPHVVYISREKRPNHFHHYKAGAMNFLVRVSG 282          
BLAST of CF504550 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  121 WTF*ERTTKQLLRKALDMSKNSS-----------SIKLTSDKTTSKQVIWENMQGLSDG--IPHLIYISREKRPKNPHHYKAGAMNVLTRVSG 360
            W   +R   +L RK  D + +S            S    +D +T  +V+WEN  G+ D   +PHL+YISREKRP   HHYK GAMN L RVSG
Sbjct:  190 WKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTGAMNFLLRVSG 282          
BLAST of CF504550 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  121 WTF*ERTTKQLLRKALDMSKNSS-----------SIKLTSDKTTSKQVIWENMQGLSDG--IPHLIYISREKRPKNPHHYKAGAMNVLTRVSG 360
            W   +R   +L RK  D + +S            S    +D +T  +V+WEN  G+ D   +PHL+YISREKRP   HHYK GAMN L RVSG
Sbjct:  190 WKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTGAMNFLLRVSG 282          
BLAST of CF504550 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  205 SDKTTSKQVIWENMQGLS--DGIPHLIYISREKRPKNPHHYKAGAMNVLTRVSG 360
            +D +T  +V+WEN  G+   + +PH +YISREKRP   HHYKAGAMN L RVSG
Sbjct:  229 NDHSTIVKVVWENKGGVGVENEVPHFVYISREKRPNYLHHYKAGAMNFLVRVSG 282          
The following BLAST results are available for this feature:
BLAST of CF504550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CSLB2_ARATH3.042e-1243.01Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB4_ARATH3.973e-1258.18Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH1.156e-1143.01Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB5_ARATH1.156e-1143.01Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB3_ARATH4.393e-1157.41Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-039 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504550 ID=CF504550; Name=CF504550; organism=Citrus sinensis; type=EST; length=362bp
AATTGGATGTTTTCTTCAACACAGAATGCCAGAATCATCCAACAATAATC
AAGGTAATAACTAGCTAGTTTATTTCTTCAGTCAATTTTTGGCTTTTACA
ATGTGCTTTGCCGTGGAAAATGGACATTCTAAGAAAGGACTACGAAACAA
CTTCTACGAAAAGCACTTGACATGTCAAAGAATTCATCCTCGATAAAATT
GACATCCGACAAAACTACGAGTAAACAAGTTATATGGGAGAATATGCAAG
GTCTCTCTGATGGGATACCACATTTAATCTACATATCCAGAGAGAAAAGG
CCAAAGAACCCACATCATTATAAAGCGGGGGCCATGAATGTATTAACTAG
AGTCTCCGGCTT
back to top