CF504559

Overview
NameCF504559
Unique NameCF504559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10366 contig Csv1_Contig10366:219..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.326e-46
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            ADMEEPIG+ILKRTE+ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVITSAIPD VGEKLIGLVTSR+EIP
Sbjct:  374 ADMEEPIGRILKRTEIADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITSAIPDKVGEKLIGLVTSRDEIP 472          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.390e-43
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            ADME+PIG++LK+TE+ADGL+LEKTS PLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVIT AIP+TVG KLIGLVTSREEIP
Sbjct:  377 ADMEDPIGRVLKKTEVADGLVLEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPETVGGKLIGLVTSREEIP 475          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.256e-42
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            A+ME+PIG++LKRTEL+DGLILEKTS PLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVI  AIPD VG KLIGLVTSREEIP
Sbjct:  378 ANMEDPIGRVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIIEAIPDNVGGKLIGLVTSREEIP 476          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.067e-41
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            A+MEEPIG +LKRTE+ DGL+LEKTS PLGVLLI+FESRPDALVQIASLAIRSGNGL+LKGGKEA RSNAILHKVITSAIP+ VG +LIGLVTSREEIP
Sbjct:  377 ANMEEPIGHVLKRTEITDGLVLEKTSSPLGVLLIIFESRPDALVQIASLAIRSGNGLVLKGGKEAKRSNAILHKVITSAIPENVGPRLIGLVTSREEIP 475          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.055e-41
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            A+ME+PIG++LK+T++AD LILEKTS P+GVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVIT AIP+TVG KLIGLVTSREEIP
Sbjct:  377 AEMEDPIGRVLKKTQVADDLILEKTSSPIGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPETVGGKLIGLVTSREEIP 475          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.541e-40
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEI 295
            A+ME+PI QILK+TE+AD L+LEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA+RSN ILHKVIT AIP  VGEKLIGLVT+R+EI
Sbjct:  377 ANMEDPINQILKKTEVADDLVLEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAIRSNTILHKVITDAIPRNVGEKLIGLVTTRDEI 474          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.647e-40
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIP 298
            ++M+EP+G  LKRTE+ADG ILEK+S PLGV+LI+FESRPDALVQIASLA+RSGNGL+LKGGKEA RSNAILHKVITSAIP +VGE+LIGLVTSREEIP
Sbjct:  377 SNMDEPLGHTLKRTEIADGFILEKSSSPLGVVLIIFESRPDALVQIASLAVRSGNGLMLKGGKEAKRSNAILHKVITSAIPVSVGERLIGLVTSREEIP 475          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: P5CS_MOUSE (Delta-1-pyrroline-5-carboxylate synthetase OS=Mus musculus GN=Aldh18a1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.216e-22
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 2
Query:    2 ADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEI 295
            A  +E +G++L+RT +A  L LE+ + P+GVLL++FESRPD L Q+A+LAI SGNGLLLKGGKEA  SN ILH +   A+     ++ I LV +REE+
Sbjct:  445 ASSQESVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAIQLVNTREEV 542          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: PROA_SYNP2 (Gamma-glutamyl phosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=proA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.391e-22
Identity = 49/98 (50.00%), Postives = 76/98 (77.55%), Query Frame = 2
Query:    5 DMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEI 295
            ++ +P+G +    EL   L+L++ +CPLGVL I+FE+RP+AL+QI SLAI+SGNG++LKGGKEA++S  +L ++I +A+ DT V  + + L+T+REEI
Sbjct:   88 NLPDPVGHLQLHRELDQDLVLKRVTCPLGVLGIIFEARPEALIQITSLAIKSGNGVILKGGKEAIQSCTVLTEIIQTALQDTAVSPQAVTLLTTREEI 185          
BLAST of CF504559 vs. ExPASy Swiss-Prot
Match: PROA_SYNY3 (Probable gamma-glutamyl phosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=proA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 49/97 (50.52%), Postives = 75/97 (77.32%), Query Frame = 2
Query:    8 MEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEI 295
            + +P+GQ+    +L +GL+L++  CPLGVL ++FE+RP+AL+QI+SLAI+SGN ++LKGG+EA RS  +L +VI +A+  T V  + I L+T+REEI
Sbjct:   94 LPDPLGQVTLHRQLDEGLVLKRVGCPLGVLGVIFEARPEALIQISSLAIKSGNAVILKGGREATRSCQVLTEVIQTALAKTVVSPEAINLLTTREEI 190          
The following BLAST results are available for this feature:
BLAST of CF504559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 314
Match NameE-valueIdentityDescription
P5CS_MESCR9.326e-4694.95Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS1_ARATH7.390e-4388.89Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_VIGAC6.256e-4288.89Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
P5CS_ACTDE1.067e-4185.86Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS2_ARATH4.055e-4185.86Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_ORYSJ1.541e-4085.71Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS_SOLLC7.647e-4081.82Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_MOUSE4.216e-2253.06Delta-1-pyrroline-5-carboxylate synthetase OS=Mus ... [more]
PROA_SYNP29.391e-2250.00Gamma-glutamyl phosphate reductase OS=Synechococcu... [more]
PROA_SYNY31.227e-2150.52Probable gamma-glutamyl phosphate reductase OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-048 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504559 ID=CF504559; Name=CF504559; organism=Citrus sinensis; type=EST; length=339bp
TGCAGACATGGAAGAACCCATTGGTCAAATTTTAAAGAGAACAGAGCTTG
CGGATGGACTCATCCTGGAGAAAACATCATGTCCTTTGGGCGTCCTCTTG
ATAGTATTTGAATCTCGACCTGATGCCCTGGTCCAGATAGCTTCATTGGC
CATTCGGAGTGGAAATGGTCTACTACTGAAAGGAGGAAAAGAAGCTATGC
GGTCAAATGCAATCTTGCACAAGGTCATCACCTCAGCTATCCCAGATACT
GTTGGTGAGAAACTTATTGGACTTGTGACTTCCAGGGAAGAGATTCCTGA
TTTGCTCAAGCTTGATGATGTGATAGATCTTGTTATCCC
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