CF504561

Overview
NameCF504561
Unique NameCF504561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX1_ARATH (Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.768e-39
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            VTHSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKP+KFKSIYL+ATLYVFTLT+PSA+AVYWAFGDQLL HSNAFSLL
Sbjct:  230 VTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTLTLPSASAVYWAFGDQLLNHSNAFSLL 311          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX2_ORYSJ (Auxin transporter-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0447200 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.870e-38
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            VTHSGPS +VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLT+PSA+A+YWAFGD LLTHSNAFSLL
Sbjct:  223 VTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTHSNAFSLL 304          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX2_MEDTR (Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.190e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            VTH+GP  LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLTIPSA AVYWAFGD+LL HSNAFSLL
Sbjct:  224 VTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSATAVYWAFGDELLNHSNAFSLL 305          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX4_MEDTR (Auxin transporter-like protein 4 OS=Medicago truncatula GN=LAX4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.107e-38
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IY LATLYVFTLTIPSA AVYWAFGD+LL HSNAFSLL
Sbjct:  224 VVHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFLATLYVFTLTIPSAVAVYWAFGDELLNHSNAFSLL 305          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX1_ORYSJ (Auxin transporter-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0856500 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.107e-38
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            +TH+GP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYLLATLYVFTLT+PSA+A+YWAFGD+LLTHSNAFSLL
Sbjct:  232 ITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLL 313          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX3_ARATH (Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.282e-38
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+T+VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IYLLAT+YV TLT+PSA+AVYWAFGD+LLTHSNA SLL
Sbjct:  222 VKHSGPTTMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATIYVLTLTLPSASAVYWAFGDKLLTHSNALSLL 303          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: AUX1_ARATH (Auxin transporter protein 1 OS=Arabidopsis thaliana GN=AUX1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.282e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLTIPSAAAVYWAFGD LL HSNAFSL+
Sbjct:  224 VKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSAAAVYWAFGDALLDHSNAFSLM 305          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX3_MEDTR (Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.701e-37
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYV TLT+PSAAAVYWAFGD LLTHSNA SLL
Sbjct:  217 VKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVMTLTLPSAAAVYWAFGDNLLTHSNALSLL 298          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX2_ARATH (Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.527e-37
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGPS LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYL ATLYV TLT+PSA+AVYWAFGD LL HSNAF+LL
Sbjct:  218 VKHSGPSKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLFATLYVLTLTLPSASAVYWAFGDLLLNHSNAFALL 299          
BLAST of CF504561 vs. ExPASy Swiss-Prot
Match: LAX5_MEDTR (Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.016e-37
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    3 VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL 248
            V HSGP+ ++LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IYLLATLYV TLTIPSA AVYWAFGD LL HSNAF+LL
Sbjct:  220 VKHSGPNKIILYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTIPSATAVYWAFGDMLLNHSNAFALL 301          
The following BLAST results are available for this feature:
BLAST of CF504561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX1_ARATH3.768e-3991.46Auxin transporter-like protein 1 OS=Arabidopsis th... [more]
LAX2_ORYSJ1.870e-3890.24Auxin transporter-like protein 2 OS=Oryza sativa s... [more]
LAX2_MEDTR3.190e-3890.24Auxin transporter-like protein 2 OS=Medicago trunc... [more]
LAX4_MEDTR7.107e-3890.24Auxin transporter-like protein 4 OS=Medicago trunc... [more]
LAX1_ORYSJ7.107e-3887.80Auxin transporter-like protein 1 OS=Oryza sativa s... [more]
LAX3_ARATH9.282e-3887.80Auxin transporter-like protein 3 OS=Arabidopsis th... [more]
AUX1_ARATH9.282e-3890.24Auxin transporter protein 1 OS=Arabidopsis thalian... [more]
LAX3_MEDTR2.701e-3789.02Auxin transporter-like protein 3 OS=Medicago trunc... [more]
LAX2_ARATH3.527e-3789.02Auxin transporter-like protein 2 OS=Arabidopsis th... [more]
LAX5_MEDTR6.016e-3786.59Auxin transporter-like protein 5 OS=Medicago trunc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-050 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504561 ID=CF504561; Name=CF504561; organism=Citrus sinensis; type=EST; length=252bp
GTGTGACTCACTCAGGCCCAAGCACGTTGGTTTTGTACTTCACCGGCGCC
ACCAATATACTCTATACTTTTGGCGGACATGCAGTGACTGTAGAAATTAT
GCATGCTATGTGGAAGCCACAGAAATTCAAGTCCATATATCTTCTTGCCA
CCCTGTATGTGTTCACTCTAACCATTCCTTCTGCTGCCGCTGTTTACTGG
GCTTTTGGTGATCAACTCCTCACACATTCAAATGCCTTCTCACTGCTTTC
CA
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