CF504567

Overview
NameCF504567
Unique NameCF504567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length230
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504567_ssr14 microsatellite CF504567_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3631 contig Csv1_Contig3631:16..245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            MGQQSLIYSFVARGTVILAEYTEF GNFT +AAQCLQKLPSSNNKFT
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFT 47          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   82 RKMGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            R MGQQ+LIYSFVARGTVIL EYTEF GNFT +AAQCLQKLPSSNNKFT
Sbjct:   64 RTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFT 112          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.244e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSSNNKFT
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFT 47          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.244e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSSNNKFT
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFT 47          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLP-SSNNKFT 228
            MGQ+S IYSFVARGT+ILAEYTEFTGNF  IAAQCLQKLP SSN+KFT
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFT 48          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            M QQSL YSF+ARGTVIL E+T+F GNFT +AAQ L+ LPSSNNKFT
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFT 47          
BLAST of CF504567 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.855e-12
Identity = 30/47 (63.83%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   88 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFT 228
            M Q+ LIYSFVA+GTV+LAE+T ++GNF+ IA QCLQKLP++++K+T
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYT 47          
The following BLAST results are available for this feature:
BLAST of CF504567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VA726_ARATH1.290e-1893.62Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH2.874e-1887.76Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH9.244e-1787.23Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH9.244e-1787.23Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH1.335e-1585.42Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH7.324e-1474.47Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH6.855e-1263.83Vesicle-associated membrane protein 727 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-056 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504567 ID=CF504567; Name=CF504567; organism=Citrus sinensis; type=EST; length=230bp
CTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTCTTGTTGTT
GTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGGACAGCAAT
CGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAGCTGAGTAC
ACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGTCTCCAGAA
ACTTCCTTCTAGTAACAACAAGTTCACTTA
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