CF504569
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_HUMAN (Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18 Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 3 Query: 39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377 P+V QFSS+GSL + KW+ +E E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+T Sbjct: 393 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVT 513
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_RAT (Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18 Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 3 Query: 39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377 P+V QFSS+GSL + KW+ +E E +TP PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+T Sbjct: 394 PVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVT 514
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_MOUSE (Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17 Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377 P+V QFSS+GSL + KW+ +E E + P PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+T Sbjct: 394 PIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVT 514
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_DROME (Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster GN=gkt PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3 Query: 39 PLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPL----IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLT 377 P+V Q SS+GSL A + +D TP+G + +++P+ +V S +G G +P + DK +LK Y +WK+S RSRAMPHIK++ R+N Q + WF+LT Sbjct: 380 PVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLT 499 The following BLAST results are available for this feature:
BLAST of CF504569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504569 ID=CF504569; Name=CF504569; organism=Citrus sinensis; type=EST; length=377bpback to top |