CF504569

Overview
NameCF504569
Unique NameCF504569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_HUMAN (Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377
            P+V QFSS+GSL   + KW+ +E          E KTP     PL +++P+VE+VR SLEGY AG ++P   +  +K ++L  Y+ KW A  +GRS AMPHIKT+ R +    K+AWFL+T
Sbjct:  393 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVT 513          
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_RAT (Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 3
Query:   39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377
            P+V QFSS+GSL   + KW+ +E          E +TP     PL +++P+VE+VR SLEGY AG ++P   +  +K  +L  Y+ KW A  +GRS AMPHIKT+ R +    KLAWFL+T
Sbjct:  394 PVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVT 514          
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_MOUSE (Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   39 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 377
            P+V QFSS+GSL   + KW+ +E          E + P     PL +++P+VE+VR SLEGY AG ++P   +  +K  +L  Y+ KW A  +GRS AMPHIKT+ R +    KLAWFL+T
Sbjct:  394 PIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVT 514          
BLAST of CF504569 vs. ExPASy Swiss-Prot
Match: TYDP1_DROME (Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster GN=gkt PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   39 PLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPL----IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLT 377
            P+V Q SS+GSL     A +         +D TP+G    +    +++P+  +V  S +G   G  +P  +   DK  +LK Y  +WK+S   RSRAMPHIK++ R+N   Q + WF+LT
Sbjct:  380 PVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLT 499          
The following BLAST results are available for this feature:
BLAST of CF504569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TYDP1_HUMAN2.207e-1844.63Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN... [more]
TYDP1_RAT6.422e-1844.63Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegic... [more]
TYDP1_MOUSE1.431e-1743.80Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN... [more]
TYDP1_DROME4.032e-1235.83Probable tyrosyl-DNA phosphodiesterase OS=Drosophi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-058 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504569 ID=CF504569; Name=CF504569; organism=Citrus sinensis; type=EST; length=377bp
TCCAGGAGTGTACCTTTGAAAAAGGGTTTAAGAAATCTCCTCTTGTTTAT
CAGTTCTCTTCCCTTGGTTCTTTGGATGAGAAGTGGATGGCCGAACTGTC
ATCCTCGATGTCATCAGGTTTCTCAGAAGACAAGACACCGCTAGGTATTG
GAGAGCCACTAATAGTATGGCCCACTGTCGAAGATGTCAGATGCTCTTTA
GAGGGCTATGCAGCTGGGAATGCTATTCCTAGCCCACAGAAGAATGTGGA
TAAAGATTTTTTGAAGAAGTATTGGGCTAAATGGAAGGCAAGCCACACAG
GCCGCAGTCGTGCAATGCCGCATATTAAGACATTTGCACGCTACAATGGT
CAGAAACTGGCTTGGTTCTTGCTAACT
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