CF504570

Overview
NameCF504570
Unique NameCF504570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2532 contig Csv1_Contig2532:395..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504570 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   58 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSS 321
            PL+G+  A KD+F  +G +T  G+   A  +  +   A  V  + + GA S+GKT MDE A   + EN H+G   NPW   R+PGGSS
Sbjct:   67 PLTGIPLAHKDVFCTEGVLTTCGSKMLA--NFVSPYDAHVVSLLKTAGAVSLGKTNMDEFAMGSSNENSHFGPAKNPWDTTRIPGGSS 152
The following BLAST results are available for this feature:
BLAST of CF504570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GATA_AZOSE3.410e-1140.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-059 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504570 ID=CF504570; Name=CF504570; organism=Citrus sinensis; type=EST; length=321bp
TATGGAGCTTTCATGGAGAAATTTGTTCTTCAACCAAGCTCTTCGGCTCA
TCAACTTCCTTTAAGTGGCCTCACTTTTGCAATTAAAGACATATTTGATG
TGGATGGACATGTCACTGGATTTGGAAATCCTGATTGGGCAAGGACTCAT
TCTGCTGCCACATCAACTGCGCCTGCTGTTTTGGCTGTGTTAAGTGGAGG
TGCCACATCTATTGGTAAAACTATCATGGATGAAATGGCATACAGTATAA
ATGGAGAAAATAAGCATTATGGAACACCCACAAATCCATGGGCACCAGAC
CGAGTACCTGGAGGATCTTCT
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