CF504571

Overview
NameCF504571
Unique NameCF504571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length152
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:724..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504571 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 2.891e-12
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 3
Query:    3 VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA*RG 107
            VGDAVPVW  M+ QGLV E VFSFWLNR+ D   G
Sbjct:  168 VGDAVPVWYTMLNQGLVQEPVFSFWLNRNADEQEG 202          

HSP 2 Score: 39.2762 bits (90), Expect = 2.891e-12
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 1
Query:  100 EEGGEIVFGGVDPNHFK 150
            +EGGE+VFGGVDPNHFK
Sbjct:  200 QEGGELVFGGVDPNHFK 216          
BLAST of CF504571 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.315e-12
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:    3 VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA*RG 107
            VG+AVPVW NMVEQGLV E VFSFWLNR+ +   G
Sbjct:  206 VGNAVPVWYNMVEQGLVKEPVFSFWLNRNVEEEEG 240          

HSP 2 Score: 36.5798 bits (83), Expect = 6.315e-12
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  100 EEGGEIVFGGVDPNHFK 150
            EEGGEIVFGGVDP H++
Sbjct:  238 EEGGEIVFGGVDPKHYR 254          
BLAST of CF504571 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.065e-11
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 3
Query:    3 VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA*RG 107
            VGDAVPVW  MVEQGLVSE VFSFW NR  D   G
Sbjct:  202 VGDAVPVWYKMVEQGLVSEPVFSFWFNRHSDEGEG 236          

HSP 2 Score: 35.039 bits (79), Expect = 1.065e-11
Identity = 13/16 (81.25%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  103 EGGEIVFGGVDPNHFK 150
            EGGEIVFGG+DP+H+K
Sbjct:  235 EGGEIVFGGMDPSHYK 250          
The following BLAST results are available for this feature:
BLAST of CF504571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CYPR1_CYNCA2.891e-1268.57Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR_CUCPE6.315e-1271.43Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ1.065e-1174.29Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-060 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504571 ID=CF504571; Name=CF504571; organism=Citrus sinensis; type=EST; length=152bp
CAGTTGGGGATGCTGTGCCTGTGTGGGACAATATGGTTGAGCAGGGCCTT
GTAAGCGAGGAGGTCTTCTCATTCTGGCTCAACAGGGATCCAGACGCCTG
AAGAGGGTGGAGAGATTGTTTTTGGTGGTGTTGATCCAAACCACTTTAAA
GC
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