CF504575

Overview
NameCF504575
Unique NameCF504575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:53..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504575 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.757e-34
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 3 
Query:   90 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAEGS 410
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  A+G+
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGN 126

HSP 2 Score: 50.0618 bits (118), Expect = 1.757e-34
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:  403 KGQDFLWHMSNVETWVSAALTDENTCTD 486
            KG DF + MSNVETWVSAALTDE TC D
Sbjct:  124 KGNDFTFRMSNVETWVSAALTDETTCMD 151
The following BLAST results are available for this feature:
BLAST of CF504575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.757e-3450.4721 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-064 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504575 ID=CF504575; Name=CF504575; organism=Citrus sinensis; type=EST; length=488bp
AAAGCTTTTAATTAGTTTCTGAAAACATGGCAAAAACAGGCTGTCTTTTG
CTATTGCTCTCTCTCCTCTACATTATAAGCTTGGTCACAGCTGCCGGGAT
TGCTGACACAAGATTTATCAGAAGTTCTTGCAAATCCACAACTTATCCAG
CGCTGTGCGTGCAGTCTCTCTCAGCTTATGCCCCATCAATTCAACAAAGC
CCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGAGCCTCTCCAGGGCCCA
ATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAGTTCAGGAACCTGAAGC
ACAGAGAGTATGAGGCGATTGCCGACTGCTTGGATGAGATGGGTGACACT
GTGGACCGGCTCAGCAAGTCGGTTCAGGAGCTGAACCACATGGGTCAGGC
CGAAGGGTCAGGACTTTCTGTGGCACATGAGCAACGTTGAGACATGGGTT
AGTGCTGCTTTGACTGATGAGAACACTTGTACTGATGG
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