CF504577

Overview
NameCF504577
Unique NameCF504577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504577_ssr4 microsatellite CF504577_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:51..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.340e-75
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 1
Query:  346 LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            L  GGAYLKYLRPQEAGW  Q FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP DKL+HVYTAILKPD
Sbjct:  106 LECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPD 190          

HSP 2 Score: 141.739 bits (356), Expect = 2.340e-75
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 3
Query:   87 QLISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            Q +   DD T+LYES+DE FDGRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLE
Sbjct:   20 QKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLE 107          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.151e-74
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1
Query:  346 LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            L  GGAYLKYLRPQ+AGW ++ FDNESPY IMFGPDKCGATNKVHFILKHKNPKSG+Y+EHHLK PPSVPSDKLTHVYTA++KPD
Sbjct:  110 LECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDKCGATNKVHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPD 194          

HSP 2 Score: 136.346 bits (342), Expect = 1.151e-74
Identity = 64/86 (74.42%), Postives = 76/86 (88.37%), Query Frame = 3
Query:   93 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            I AS DA I YES+DESF+G WIVS+K++Y G WKHSKSEGH+DYGLLV + A+KYAIVKEL++P+ LKDGT+VLQYEVRLQNGLE
Sbjct:   27 ICASSDA-IFYESFDESFEGSWIVSEKEDYPGEWKHSKSEGHDDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLE 111          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.068e-73
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1
Query:  346 LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            L  GGAYLKYLRPQEAGWV Q FDN+SPY IMFGPDKCGATNKVHFILKHKNPKSGE++EHHLK PPSVP D L+HVYTA+LK D
Sbjct:  108 LECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCGATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSD 192          

HSP 2 Score: 136.732 bits (343), Expect = 8.068e-73
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 3
Query:   93 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKEL--DEPLSLKDGTVVLQYEVRLQNGLE 350
            +S  DD TILYES+DE FDGRW+VS+K EY+GVWKH KSEGH+DYGLLV E AKKY IVKEL  DEPL+L +GTVVLQYE R Q GLE
Sbjct:   22 VSYCDDQTILYESFDEPFDGRWVVSEKAEYQGVWKHEKSEGHDDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLE 109          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.704e-40
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1
Query:  322 MRFASRMV--LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            ++F +R+   L  GGAY+KYLRPQE+GW  +EFDNESPY IMFGPDKCGATNKVHFI KHKNPKSGEY+EHHLK PPSVPSDKLTHVYTAILKPD
Sbjct:  105 LQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPD 199          

HSP 2 Score: 138.272 bits (347), Expect = 2.881e-32
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 3
Query:   90 LISASDDA--TILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            L+ ASDDA   I YES+DE FDGRWIVS K++Y GVWKH+KS+GH+DYGLLV E A+KYAIVKEL E +SLKDGTVVLQ+E RLQNGLE
Sbjct:   28 LVRASDDADDAIFYESFDEDFDGRWIVSDKEDYNGVWKHAKSDGHDDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLE 116          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 1
Query:  322 MRFASRMV--LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPD 600
            ++F +R+   L  GGAY+KYL+ QE+GW  + FDNES Y IMFGPD+CGATNKVHFI +HKNPK+G+++EHHLK PPSVPSDKL+HVYTA+LK D
Sbjct:  106 LQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDD 200          

HSP 2 Score: 141.739 bits (356), Expect = 2.606e-33
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 3
Query:   90 LISASD--DATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            L+ ASD  D  I YES+DE FD RWIVS K+EY GVWKHSKSEGH+D+GLLV EPA+KYAIVKELD P+SLKDGTVVLQ+E RLQNGLE
Sbjct:   29 LVRASDEVDDAIFYESFDEDFDNRWIVSGKEEYNGVWKHSKSEGHDDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLE 117          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.048e-24
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  346 LNGGGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHL-KNPPSVPSDKLTHVYTAILKPD 600
            LN GGAYLK L     G +S   D    Y IMFGPDKCG  ++VHFI KHKNP +GEY E HL   P S+    +T++YT I+KPD
Sbjct:  130 LNCGGAYLKLLAEPTHGEMSNSID----YRIMFGPDKCGVNDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPD 211          

HSP 2 Score: 41.5874 bits (96), Expect = 6.048e-24
Identity = 27/89 (30.34%), Postives = 44/89 (49.44%), Query Frame = 3
Query:  120 LYESYDESFDGRWIVS---------QKDEYKGVWKHSKSEG----HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGL 347
            L E +  ++  RWI S         ++  Y G W   +S G      + GL++ + A  +AI  E DEP++  +  +V+QYEV  + GL
Sbjct:   42 LVEQFQGAWSERWIPSHAKRFVNGIEEMSYVGEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGL 130          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.023e-23
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPD 600
            GGAY+K L  + A     +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PD
Sbjct:  162 GGAYVKLLS-KTAELSLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 246          

HSP 2 Score: 42.743 bits (99), Expect = 1.023e-23
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +S+D      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+E
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE 160          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.733e-23
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPD 600
            GGAY+K L       + Q F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PD
Sbjct:  161 GGAYVKLLSKTPELNLDQ-FHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 245          

HSP 2 Score: 43.8986 bits (102), Expect = 1.733e-23
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +S+D      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+E
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE 159          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.733e-23
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPD 600
            GGAY+K L       + Q F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PD
Sbjct:  161 GGAYVKLLSKTPELNLDQ-FHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 245          

HSP 2 Score: 43.8986 bits (102), Expect = 1.733e-23
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +S+D      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+E
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE 159          
BLAST of CF504577 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.255e-23
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  355 GGAYLKYLRPQEAGWVSQEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPD 600
            GGAY+K L       + Q F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PD
Sbjct:  162 GGAYVKLLSKTSELNLDQ-FHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 246          

HSP 2 Score: 42.743 bits (99), Expect = 2.255e-23
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 3
Query:  126 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLE 350
            +S+D      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+E
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE 160          
The following BLAST results are available for this feature:
BLAST of CF504577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CALX1_ARATH2.340e-7585.88Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_HELTU1.151e-7484.71Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX2_ARATH8.068e-7383.53Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_SOYBN1.704e-4080.00Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX_PEA1.545e-3367.37Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_SCHPO6.048e-2453.49Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_MOUSE1.023e-2351.16Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CALX_PONAB1.733e-2351.16Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]
CALX_HUMAN1.733e-2351.16Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CALX_RAT2.255e-2351.16Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-066 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504577 ID=CF504577; Name=CF504577; organism=Citrus sinensis; type=EST; length=601bp
GGACTCTCTCTCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGG
TTCGCTCTCCTGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGC
TTCTGATGATGCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACG
GACGATGGATCGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCAT
TCAAAGAGTGAGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGC
AAAGAAGTACGCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGG
ATGGAACTGTTGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAA
TGGTGGTGGTGCATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGG
TATCCCAGGAGTTCGACAATGAATCTCCGTATATGATTATGTTTGGACCT
GATAAATGTGGTGCAACAAACAAGGTGCACTTCATCTTAAAGCATAAGAA
TCCCAAGAGTGGAGAGTACATTGAACACCATCTCAAGAACCCACCTTCTG
TGCCCTCTGATAAACTGACTCATGTATACACTGCCATCTTGAAACCTGAT
A
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