CF504582

Overview
NameCF504582
Unique NameCF504582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig189 contig Csv1_Contig189:288..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_ALNGL (Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.617e-36
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 3
Query:   99 PEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            PEGREYLDLS+GIAVN LGH D+DW++AV +QA  LTHVSN++YSIPQ+ELAKRLVA SFADRVFFSN+G
Sbjct:   82 PEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSFADRVFFSNSG 151          

HSP 2 Score: 53.1434 bits (126), Expect = 1.617e-36
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 2
Query:    2 KEVMEAENKLLVGTYNRAPVVLASGKGCKLYD 97
            KEVMEA  ++LVGTY R PVVL+ GKGCKLYD
Sbjct:   50 KEVMEAAGRVLVGTYARVPVVLSRGKGCKLYD 81          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.026e-16
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            EG  Y+D  +G+AVN++GH       A+  QA  L H SN+YY+  Q+ELAK L A S  DRVFF+N+G
Sbjct:   37 EGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDRVFFANSG 105          

HSP 2 Score: 36.965 bits (84), Expect = 1.026e-16
Identity = 14/32 (43.75%), Postives = 23/32 (71.88%), Query Frame = 2
Query:    2 KEVMEAENKLLVGTYNRAPVVLASGKGCKLYD 97
            +E++E E K ++ TY R P+VL+ GKG  ++D
Sbjct:    4 EEIIELERKFIMQTYTRQPIVLSHGKGATVWD 35          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.732e-16
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G++YLD  +GI VN +GH     ++A+  QA  L H SN+YY+IPQI+LAK+LV  S  DR FF N+G
Sbjct:   37 DGKKYLDFLAGIGVNNVGHCHPKVVEAIKKQAETLIHTSNIYYTIPQIKLAKKLVELSGLDRAFFCNSG 105          

HSP 2 Score: 30.4166 bits (67), Expect = 1.732e-16
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 2
Query:   11 MEAENKLLVGTYNRAPVVLASGKGCKLYD 97
            ++ E K  +  Y R PVVL  GKG ++YD
Sbjct:    7 IDLEKKYHLQIYGRLPVVLVEGKGMEVYD 35          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.097e-15
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            EG  YLD  +GIAVN+LGH     ++A+  QA  L H SN+Y++  QIELA+ +   SF  +VFF+N+G
Sbjct:   32 EGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAETLIHCSNLYWNEKQIELARMISENSFGGKVFFANSG 100          

HSP 2 Score: 32.7278 bits (73), Expect = 3.097e-15
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 2
Query:   20 ENKLLVGTYNRAPVVLASGKGCKLYDA 100
            E K L+ TYNR P++L  G+G +++D+
Sbjct:    5 EKKYLMDTYNRYPIMLVKGEGTRVWDS 31          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_CAUCR (Succinylornithine transaminase OS=Caulobacter crescentus GN=astC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.453e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   72 VVKDVNCTM--PEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +V+   C +   +GR+YLDL++G+AVN LGHGD   ++A+  QA++L H SN+Y    Q  LA +L   +FADRVFF+N+G
Sbjct:   15 IVRGEGCWLYDQDGRDYLDLAAGVAVNTLGHGDPRLVQALKTQADILWHASNLYRLPAQEALATKLTDATFADRVFFANSG 95          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.493e-14
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 3
Query:   75 VKDVNCTMPEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            V DVN     G+ YLDL +GIA  ++GH ++  ++ + +Q   L H+SN+YY+ PQ+ELA++L   +  DR FF N+G
Sbjct:   30 VYDVN-----GKRYLDLVAGIATVSIGHCNSHLVERLKEQLEKLIHISNLYYTTPQVELAEKLSEIAGMDRFFFCNSG 102          

HSP 2 Score: 31.5722 bits (70), Expect = 1.493e-14
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 2
Query:   11 MEAENKLLVGTYNRAPVVLASGKGCKLYD 97
            +E E K ++ TY R  VV+  G+GC +YD
Sbjct:    4 IEREKKHILQTYTRQKVVIERGEGCYVYD 32          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_XANCP (Acetylornithine aminotransferase OS=Xanthomonas campestris pv. campestris GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTG 308
            +GREYLDLSSGIAV+ LGH D D + A+ +QA  L H SN+++S P ++LA+ LV  S FA +VF  N+G
Sbjct:   38 QGREYLDLSSGIAVSGLGHNDPDLMAALTEQAGKLWHTSNVFFSAPPLKLAEELVTASRFAQKVFLCNSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTG 308
            GREYLDLSSGIAV+ LGH D D + A+ +QA  L H SN+++S P ++LA+ LV+ S FA +VF  N+G
Sbjct:   39 GREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTSNVFFSAPPLKLAEELVSASRFAHKVFLCNSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_HAEDU (Acetylornithine aminotransferase OS=Haemophilus ducreyi GN=argD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G +YLD +SGI VN+LG  D DW++AV+ Q + L+H SN++Y+ P   LAK LV  S   RVFF+N+G
Sbjct:   37 DGNKYLDFTSGIGVNSLGWADPDWLEAVIAQLHKLSHTSNLFYTEPSARLAKHLVQVSGLKRVFFANSG 105          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_THEMA (Acetylornithine aminotransferase OS=Thermotoga maritima GN=argD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.518e-14
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G  YLD +SGIAVN LGH     ++A+ DQA  L H SN++++ PQ+ELA+ L   +F  +VFF+NTG
Sbjct:   26 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTG 94          

HSP 2 Score: 25.409 bits (54), Expect = 2.518e-14
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 2
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            L+ TY+R P     GKG  +YD
Sbjct:    3 LMNTYSRFPATFVYGKGSWIYD 24          
The following BLAST results are available for this feature:
BLAST of CF504582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ARGD_ALNGL1.617e-3678.57Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD_METTH1.026e-1649.28Acetylornithine aminotransferase OS=Methanobacteri... [more]
ARGD_METJA1.732e-1650.72Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_THETN3.097e-1547.83Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
ASTC_CAUCR1.453e-1446.91Succinylornithine transaminase OS=Caulobacter cres... [more]
ARGD_ARCFU1.493e-1442.31Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ARGD_XANCP2.479e-1454.29Acetylornithine aminotransferase OS=Xanthomonas ca... [more]
ARGD_XANAC2.479e-1455.07Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
ARGD_HAEDU2.479e-1450.72Acetylornithine aminotransferase OS=Haemophilus du... [more]
ARGD_THEMA2.518e-1449.28Acetylornithine aminotransferase OS=Thermotoga mar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504582 ID=CF504582; Name=CF504582; organism=Citrus sinensis; type=EST; length=309bp
CAAGGAGGTGATGGAGGCGGAGAATAAGTTACTCGTGGGGACGTACAATA
GGGCACCAGTTGTGCTGGCGAGTGGTAAAGGATGTAAATTGTACGATGCC
TGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAATGCGC
TTGGACATGGGGATGCTGATTGGATCAAGGCTGTTGTTGATCAAGCTAAT
GTGTTGACTCATGTTAGCAATATGTATTATTCCATTCCTCAGATAGAGCT
TGCTAAGCGTTTGGTGGCTTGTTCTTTTGCTGATCGTGTGTTTTTCTCCA
ATACTGGAA
back to top