CF504584

Overview
NameCF504584
Unique NameCF504584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.369e-48
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRSVYC+PKRA FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG
Sbjct:  788 GFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 846

HSP 2 Score: 90.1225 bits (222), Expect = 1.369e-48
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A LL+EAIQVISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  750 ACLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH 792
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.325e-48
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRSVYC+PKRA FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG
Sbjct:  792 GFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 850

HSP 2 Score: 89.3521 bits (220), Expect = 2.325e-48
Identity = 39/43 (90.70%), Postives = 43/43 (100.00%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLL+E+IQVISCGYE+KTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  754 ASLLRESIQVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMH 796
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.287e-47
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRS+YCIPKRA FKGSAP+NLSDRLHQVLRWALGS+EIF S HCP+WYGYG
Sbjct:  796 GFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYG 854

HSP 2 Score: 90.1225 bits (222), Expect = 3.287e-47
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLLKEAI VISCGYEDKT+WGKE+GWIYGSVTEDILTGFKMH
Sbjct:  758 ASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 800
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.287e-47
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRS+YCIPKRA FKGSAP+NLSDRLHQVLRWALGS+EIF S HCP+WYGYG
Sbjct:  796 GFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYG 854

HSP 2 Score: 90.1225 bits (222), Expect = 3.287e-47
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLLKEAI VISCGYEDKT+WGKE+GWIYGSVTEDILTGFKMH
Sbjct:  758 ASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 800
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.277e-47
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRS+YCIPKR  FKGSAP+NLSDRLHQVLRWALGSVEIF S+HCP+WYGYG
Sbjct:  796 GFKMHCHGWRSIYCIPKRPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSKHCPLWYGYG 854

HSP 2 Score: 89.7373 bits (221), Expect = 7.277e-47
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLLKEAI VISCGYEDKT+WGKE+GWIYGS+TEDILTGFKMH
Sbjct:  758 ASLLKEAIHVISCGYEDKTDWGKEIGWIYGSITEDILTGFKMH 800
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 9.485e-47
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +   HGWRSVYC PK A FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG
Sbjct:  789 GFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 847

HSP 2 Score: 91.2781 bits (225), Expect = 9.485e-47
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A LLKEAIQVISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  751 ACLLKEAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH 793
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.737e-46
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +   HGWRSVYC PK   FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG
Sbjct:  774 GFKMHSHGWRSVYCTPKIPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 832

HSP 2 Score: 92.0485 bits (227), Expect = 2.737e-46
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLL+EAIQVISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  736 ASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH 778
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.056e-46
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  CHGWRS+YCIPK   FKGSAP+NLSDRLHQVLRWALGSVEIF S HCP+WYGYG
Sbjct:  797 GFKMHCHGWRSIYCIPKLPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSNHCPLWYGYG 855

HSP 2 Score: 90.1225 bits (222), Expect = 6.056e-46
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ASLLKEAI VISCGYEDKT+WGKE+GWIYGSVTEDILTGFKMH
Sbjct:  759 ASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 801
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.564e-45
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  C GWRS+YC+P R  FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCP+WYGYG
Sbjct:  692 GFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG 750

HSP 2 Score: 86.6557 bits (213), Expect = 8.564e-45
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ++L+KEAI VISCGYE+KTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  654 STLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMH 696
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.564e-45
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  C GWRS+YC+P R  FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCP+WYGYG
Sbjct:  692 GFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG 750

HSP 2 Score: 86.6557 bits (213), Expect = 8.564e-45
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ++L+KEAI VISCGYE+KTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  654 STLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMH 696
The following BLAST results are available for this feature:
BLAST of CF504584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CESA2_ARATH1.369e-4889.83Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA9_ARATH2.325e-4889.83Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA5_ORYSJ3.287e-4781.36Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI3.287e-4781.36Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA6_ORYSJ7.277e-4781.36Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA6_ARATH9.485e-4786.44Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH2.737e-4684.75Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA3_ORYSJ6.056e-4679.66Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA4_ORYSJ8.564e-4581.36Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI8.564e-4581.36Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-073 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504584 ID=CF504584; Name=CF504584; organism=Citrus sinensis; type=EST; length=296bp
GCGAGCTTCACTATTGAAAGAAGCAATCCAAGTGATCAGCTGTGGTTATG
AAGATAAAACAGAATGGGGGAAGGAAGTTGGCTGGATATATGGTTCTGTG
ACTGAGGATATCCTGACTGGGTTTAAGATGCACCTGCCATGGTTGGAGAT
CTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCCATC
AATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTGT
TGAGATATTCTTGAGCAGACATTGTCCAATCTGGTATGGTTATGGG
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