CF504585

Overview
NameCF504585
Unique NameCF504585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:37..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-17
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G+   G VCP   CCS+FGWCG T+DYC  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CP
Sbjct:   23 QCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACP 103          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   55 AQQGTVEAG-VVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDG----GELGKIISRKMFEDLLEYRNDKRCP 300
            A+Q   +AG  +CPGG CCS +GWCG T DYC +GCQS C+    G      G  G G    G L  II   MF+D+L+YRND +CP
Sbjct:   21 AEQCGQQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCP 107          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCP 300
            Q G      +CPGG CCS +GWCG T DYC  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCP
Sbjct:   24 QCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCP 111          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G VCPGG CCS+FGWCG T DYC  GCQS C+                 G++G++I+R MF D+L++RN+  CP
Sbjct:   22 QCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCP 87          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRC 297
            Q G      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC
Sbjct:   24 QCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRC 103          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CPGG CCS+FGWCG TTDYC  GCQS C            G +    +L  +ISR  F+ +L++RND  CP
Sbjct:   29 QCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACP 98          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q GT   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C
Sbjct:   22 QCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNAC 89          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G  CP G CCS+FGWCG T DYC  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C
Sbjct:   25 QCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNAC 101          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G+   G +CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CP
Sbjct:   22 QCGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSG-SCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACP 101          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISRKMFEDLLEYRNDKRCP 300
            Q G+   G +CP   CCS +GWCG T+DYC +GCQS C+   CG      G  G GG  G      ++S+++FE LL +RND  CP
Sbjct:   25 QCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACP 108          
The following BLAST results are available for this feature:
BLAST of CF504585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI12_ORYSJ1.083e-1745.68Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_POPTR9.169e-1748.28Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI6_POPTR9.169e-1747.73Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI1.197e-1645.68Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIC_POPTR3.484e-1649.40Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIT_PHAVU1.014e-1545.68Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_PEA1.014e-1546.25Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_TOBAC1.324e-1549.38Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_ORYSJ1.729e-1543.21Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ3.852e-1544.19Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-074 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504585 ID=CF504585; Name=CF504585; organism=Citrus sinensis; type=EST; length=301bp
GGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTA
GGAGGCTCAGCAGGGAACTGTGGAAGCCGGCGTTGTGTGCCCAGGAGGGG
AGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGT
GAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCC
CGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
G
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