CF504595

Overview
NameCF504595
Unique NameCF504595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig551 contig Csv1_Contig551:1..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504595 vs. ExPASy Swiss-Prot
Match: Y3627_ARATH (VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.015e-49
Identity = 105/167 (62.87%), Postives = 127/167 (76.05%), Query Frame = 3 
Query:    3 RIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENG--SYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALE 497
            RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQG+S+FAQG+  +KNENG  SYR PNL RSLT+EN+   RY+PV+L  +  G Y  SKN  GGSW   S    E      S++    SKTREEKLLETIVT GGVRLQPTRDA+ VF++EAAK+DA+A+S AL+
Sbjct:  147 RIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQGISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKD--GNYGTSKNTTGGSWGHASGEASE-----SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEAAKMDAVALSIALD 306
The following BLAST results are available for this feature:
BLAST of CF504595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3627_ARATH1.015e-4962.87VHS domain-containing protein At3g16270 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-084 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504595 ID=CF504595; Name=CF504595; organism=Citrus sinensis; type=EST; length=501bp
AACGAATACAAGGATTCGGGAATACAAACTTTGAAATGCCATCAGAAGAC
AAGAAATCATTTCTTAGTGAGGTGGTTGGCCTGGGCAGTGCATCTATCAA
GCAGGGACTCAGTAGTTTTGCTCAAGGCAATTCAATGAGAAAGAATGAAA
ATGGAAGTTATAGAAGTCCAAATCTTCGAAGGTCGTTGACAATAGAGAAT
GATTATTCAGATAGATATGAGCCGGTTGAATTACGCAATGAAACTCAGGG
TGGTTATGATATTTCAAAAAATGTGGCAGGTGGATCTTGGAACCAGGATT
CAAGGGTTTTAAAAGAAGACAGGTTAAATGGGGACTCTAGTGCAAGTTAT
ACTGGGAGTAAGACACGTGAAGAAAAGTTGTTGGAGACCATTGTGACATA
TGGTGGTGTACGTCTCCAACCAACTCGAGATGCCATTCAGGTTTTCCTTG
TCGAGGCTGCTAAGTTGGATGCATTGGCTATGAGTCGGGCCCTTGAAGCA
A
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