CF504600

Overview
NameCF504600
Unique NameCF504600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig395 contig Csv1_Contig395:147..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.064e-48
Identity = 99/127 (77.95%), Postives = 105/127 (82.68%), Query Frame = 2 
Query:   35 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            MAP K D SKK DP            SG T KKK++K+RT VTFHRPKTLKKDRNPKYPRISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIR
Sbjct:    1 MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIR 127
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.815e-48
Identity = 100/127 (78.74%), Postives = 105/127 (82.68%), Query Frame = 2 
Query:   35 MAPKVDSSKKGDPXXXXXXXXXXXXSG-PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            MAP    +KK D             SG  T +KKAKK+RTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIR
Sbjct:    1 MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIR 127
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.536e-47
Identity = 97/127 (76.38%), Postives = 104/127 (81.89%), Query Frame = 2 
Query:   35 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            M+P KVD++KK DP            SG  FKKK KK+RT VTFHRPKTL K R  KYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIR
Sbjct:    1 MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 127
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.301e-46
Identity = 97/127 (76.38%), Postives = 104/127 (81.89%), Query Frame = 2 
Query:   35 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            M+P KVD +KK D             SG T  KK KK+RTSVTFHRP+TL KDRNPKYPRISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIR
Sbjct:    1 MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIR 127
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.699e-46
Identity = 96/127 (75.59%), Postives = 102/127 (80.31%), Query Frame = 2 
Query:   35 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            M+P KVD +KK DP            SG   KK AKK+RT VTFHRPKTL   R PKYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIR
Sbjct:    1 MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 127
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2 
Query:  131 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIR
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2 
Query:  131 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIR
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2 
Query:  131 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIR
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2 
Query:  131 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIR
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129
[Close]
BLAST of CF504600 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 2 
Query:  119 TFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIR 412
            T  K  +++RTSVTF RPKTL+  R PKYPR S P   ++D Y+ L  PL TESAMKKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIR
Sbjct:   34 TSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIR 131
The following BLAST results are available for this feature:
BLAST of CF504600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL23A_TOBAC1.064e-4877.9560S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_FRIAG1.815e-4878.7460S ribosomal protein L23A OS=Fritillaria agrestis... [more]
R23A1_ARATH1.536e-4776.3860S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_DAUCA1.301e-4676.3860S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A2_ARATH1.699e-4675.5960S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
RL23A_RAT4.339e-3474.4760S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE4.339e-3474.4760S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN4.339e-3474.4760S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN4.339e-3474.4760S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR3.558e-2861.2260S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-089 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504600 ID=CF504600; Name=CF504600; organism=Citrus sinensis; type=EST; length=490bp
ATTCAGAGGTGTTTCGTAGGACAAGACCAATCCAATGGCTCCCAAAGTTG
ACAGCTCAAAAAAGGGTGATCCAAAGGCCCAGGCTACTAAGGTTGCCAAG
GCTGTGAAATCAGGGCCGACTTTTAAGAAGAAGGCGAAGAAGATGCGGAC
CTCAGTCACATTCCACAGGCCAAAGACACTGAAGAAGGACAGAAACCCCA
AGTATCCCCGCATTAGTGCTCCACCGAGGAACAAGTTGGACCACTACCAA
ATTCTCAAGTATCCCTTGACTACCGAGTCAGCTATGAAGAAGATCGAGGA
CAATAATACCTTGGTTTTCATTGTTGACATCCGTGCTGATAAGAGGAAGA
TCAAGGATGCCGTCAAGAAAATGTACGAAATTCAGACCAAGAAAGTCAAC
ACTTTGATCAGGTAAATTTCATTAACTAACATACATAATACATAATTCTG
TTTTCTCTGATACAGATACTTTTATTGTTACTTTAAGTAG
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