CF504601

Overview
NameCF504601
Unique NameCF504601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10176 contig Csv1_Contig10176:31..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504601 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:   88 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNY-KIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAET 435
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  T
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNT 149
The following BLAST results are available for this feature:
BLAST of CF504601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC8.221e-1132.5221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-090 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504601 ID=CF504601; Name=CF504601; organism=Citrus sinensis; type=EST; length=437bp
TAAAAATGAAGACTTCATTGATAACAACACTCTCCTTCCTTATCCTTACC
TTGGCCACGCATGCCTCTATTGGGCATCTCATCAAACTCTGAACCTGTCT
TAGATATCATTGGCAACAAGGTCAAATCCACCCTCGAGTATAAACTTATC
CCAGTCCTAGATGGCGCCGGGGGATTCAGCACACACCTAGGCACAAATGG
ACAGTGTCCCTTGGACGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAG
ATAATTTAAGATTACTTCCGTACGACAATTACAAAATTGTCAAGGTATCC
ACTGATGTCAACCTGAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAA
TGAAGAACCATTGTGGAAAGTTGATAGCTATGACGATCCATTAATTGTAA
CCGGCGGAAGTGAGGGCCACCCAGGAGCTGAAACGTT
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