CF504652

Overview
NameCF504652
Unique NameCF504652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9509 contig Csv1_Contig9509:258..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504652 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2
Query:    2 AHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMNDIQTWVSAALTDETTCSDGF 271
            A  +L V+L   +     M +++K  G+K R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   M++++TWVSAALTDETTC DGF
Sbjct:   61 ASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGF 153          
The following BLAST results are available for this feature:
BLAST of CF504652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.002e-1543.0121 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-141 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504652 ID=CF504652; Name=CF504652; organism=Citrus sinensis; type=EST; length=280bp
CGCCCATGCATCCCTCAACGTGACCCTTGCAATGGCTAAATCAACGTCAG
CCGTCATGTTAAAGATATCGAAAAGCCTTGGAATGAAGCCTAGAGAGGCG
GAAGCCATGCAAGATTGTTTGGAGGAGCTGAGTGATTCAGTTGATGAACT
CAGAAAGTCTATTGGCGAAATGGGTCTGATCAAAGCTTCTAACTTTGAAC
TCACAATGAATGATATACAGACTTGGGTTAGTGCTGCTTTGACTGATGAG
ACTACTTGCAGCGATGGATTTGAAAAAAAT
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