CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.123e-72
Identity = 138/156 (88.46%), Postives = 144/156 (92.31%), Query Frame = 1
Query:   94 RSPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            R  L  R Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+ NMISNPVNSTVPIAAE FKKAGTYNEK
Sbjct:   19 RPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEK 174          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.218e-70
Identity = 130/150 (86.67%), Postives = 142/150 (94.67%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSEV GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+ NMISNPVNSTVPIAAE FKKAGTY+EK
Sbjct:   25 RSFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVNSTVPIAAEVFKKAGTYDEK 174          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.590e-69
Identity = 129/160 (80.62%), Postives = 146/160 (91.25%), Query Frame = 1
Query:   82 SKPLRSPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            + P++  L  RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L  AIAKYCP A+ NMISNPVNSTVPIAAE FKKAGTY+EK
Sbjct:   10 ASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEK 169          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.088e-67
Identity = 127/150 (84.67%), Postives = 140/150 (93.33%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC+AIAKYCP+A+ NMISNPVNSTVPIAAE FKKAG Y+EK
Sbjct:   20 RSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEK 169          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.052e-67
Identity = 128/160 (80.00%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   82 SKPLRSPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            S   +  L  R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L SAIAKYCP+A+ NMISNPVNSTVPIAAE FKKAG Y+EK
Sbjct:   10 SASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEK 169          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.571e-66
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 1
Query:   97 SPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            S +  RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAGIV+ L +AIAKYCP+AI NMISNPVNSTVPIA+E  KKAG Y+EK
Sbjct:   12 SRVARRGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEK 166          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = 1
Query:  130 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+NT + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CPNAI N+ISNPVNSTVPIAAE FKKAGTY+ K
Sbjct:   41 AAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPK 184          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 5.796e-53
Identity = 102/139 (73.38%), Postives = 117/139 (84.17%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV +D+ H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC AIAK CP AI N+ISNPVNSTVPIAAE FK+AGTY+ K
Sbjct:   43 KVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGTYDPK 181          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.686e-52
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AI N+ISNPVNSTVPIAAE FKKAGTY+ K
Sbjct:   43 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPK 184          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.876e-52
Identity = 102/142 (71.83%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G  QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AI N+ISNPVNSTVPIAAE FKKAGT++ K
Sbjct:   41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPK 182          
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDHM_EUCGU1.123e-7288.46Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_CITLA5.218e-7086.67Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM2_ARATH2.590e-6980.63Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM1_ARATH1.088e-6784.67Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_BRANA7.052e-6780.00Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM_FRAAN1.571e-6682.58Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHG_ORYSJ1.802e-5472.92Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_SOYBN5.796e-5373.38Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG_CUCSA1.686e-5271.13Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_ARATH2.876e-5271.83Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
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