CF504661

Overview
NameCF504661
Unique NameCF504661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:121..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.320e-30
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            FL LVK+ LRP FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR
Sbjct:   48 FLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERR 100          

HSP 2 Score: 51.9878 bits (123), Expect = 1.320e-30
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E NEFVGDK AYALSQGLKVIACVGE
Sbjct:  102 LLGESNEFVGDKVAYALSQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.238e-30
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LNEGQ                FL +VKS LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL +PWVILGHSERR
Sbjct:   27 LNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERR 100          

HSP 2 Score: 51.9878 bits (123), Expect = 2.238e-30
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E NEFVGDK AYALSQGLKVIACVGE
Sbjct:  102 LLGESNEFVGDKVAYALSQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.942e-30
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LNEGQ                FL +VKS LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR
Sbjct:   27 LNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERR 100          

HSP 2 Score: 51.9878 bits (123), Expect = 4.942e-30
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E NEFVGDK AYALSQGLKVIACVGE
Sbjct:  102 LLGESNEFVGDKVAYALSQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.377e-30
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LNE Q                FL LVKS+LR  F VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR
Sbjct:   27 LNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERR 100          

HSP 2 Score: 51.9878 bits (123), Expect = 8.377e-30
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            ILNE +EFVGDK AYAL+QGLKVIACVGE
Sbjct:  102 ILNESSEFVGDKVAYALAQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.091e-29
Identity = 48/74 (64.86%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LNE +                FL  VK+ LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR
Sbjct:   27 LNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERR 100          

HSP 2 Score: 54.6842 bits (130), Expect = 1.091e-29
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +LNE NEFVGDK AYALSQGLKVIACVGE
Sbjct:  102 LLNESNEFVGDKTAYALSQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.135e-27
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LN GQ                FL +VK+ LRP   VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR
Sbjct:   27 LNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERR 100          

HSP 2 Score: 47.3654 bits (111), Expect = 6.135e-27
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E +EFVG+K AYAL+QGLKVIACVGE
Sbjct:  102 LLGESSEFVGEKVAYALAQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 7.986e-27
Identity = 48/74 (64.86%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   30 LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            LN GQ                FL  VK  LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR
Sbjct:   27 LNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERR 100          

HSP 2 Score: 46.595 bits (109), Expect = 7.986e-27
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E +EFVG+K AYAL+QGLKVIACVGE
Sbjct:  102 LLAESSEFVGEKVAYALAQGLKVIACVGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.245e-25
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  135 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERR 41          

HSP 2 Score: 54.6842 bits (130), Expect = 9.245e-25
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +LNE NEFVGDK AYALSQGLKVIACVGE
Sbjct:   43 LLNETNEFVGDKVAYALSQGLKVIACVGE 71          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.444e-21
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            FL    + L+    VAAQNCWVKKGGAFTGE+SA+ML NL I WVILGHSERR
Sbjct:   48 FLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERR 100          

HSP 2 Score: 43.8986 bits (102), Expect = 5.444e-21
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            +L E NEFVG K AYA S+GL VIAC+GE
Sbjct:  102 LLGESNEFVGKKAAYAQSEGLGVIACIGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.633e-19
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            ++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +L   WVILGHSERR
Sbjct:  114 YIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERR 166          

HSP 2 Score: 44.2838 bits (103), Expect = 3.633e-19
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            ++ E NEF+G K AYAL+QG+ VIAC+GE
Sbjct:  168 VIGEQNEFIGKKAAYALNQGVGVIACIGE 196          
The following BLAST results are available for this feature:
BLAST of CF504661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
TPIS_PETHY1.320e-3088.68Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE2.238e-3067.57Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ4.942e-3067.57Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_ARATH8.377e-3067.57Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_COPJA1.091e-2964.86Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_HORVU6.135e-2762.16Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE7.986e-2764.86Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_LACSA9.245e-2589.74Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP5.444e-2169.81Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL3.633e-1962.26Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-150 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504661 ID=CF504661; Name=CF504661; organism=Citrus sinensis; type=EST; length=343bp
TGAAGAAGTGAAAAAGATAGTGAGCGTACCTCAATGAAGGTCAAGTTCCA
TCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGG
ACTGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCCGCACAGAATT
GCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATG
CTCGTCAATTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAG
ACCCTATTTTGAATGAATTAAATGAGTTTGTTGGGGATAAGGGTGCATAT
GCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGA
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