CF504664

Overview
NameCF504664
Unique NameCF504664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:45..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.900e-29
Identity = 62/139 (44.60%), Postives = 91/139 (65.47%), Query Frame = 3
Query:   93 VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGA 509
            +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP V + +F+AP+ASIIGDV +G+ SSIWY  VLRGDVNSI +G  T + D ++VH + +   G   PT IGD V +   +++H  T+  E+F+G G+
Sbjct:   10 LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGP-KPTQIGDKVYIGPGSIVHAATILGESFIGTGS 147          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.641e-19
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  225 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            + K+  +A  A I+GDV +G  SS+WY  V+RGDV+ I +G+ +NIQD  +VH +K        PT IGD V++ H AV+HGC +ED   VGM A  L G
Sbjct:    2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG------YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNG 95          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.752e-18
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  234 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            D+++APSA++IG V++  G+S+W+G VLRGD   I +G  +N+QD S++H           P T+G  VTV H+A+LHGC+V D + VG+ A  L G
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG------YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNG 105          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  210 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV  KS+ +    P TIG++VTV H  +LHGCT+ +   VGMG+  L G
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDG 115          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  210 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV  KS+ +    P TIG++VTV H  +LHGCT+ +   VGMG+  L G
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDG 115          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q+  +VH A S+ +G    T I   VTV   ++L  CT+E E  +G  +  + G
Sbjct:   70 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEG 171          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q+  +VH A S+ +G    T I   VTV   ++L  CT+E E  +G  +  + G
Sbjct:   66 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEG 167          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   63 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR 320
            MGTLGRA++TVG  IR T QA  R+G  LQG+++ ++ LSRHRTL+              VAP+AS+IGDVQ+ +GS I Y  V R
Sbjct:    1 MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLIT-------------VAPNASVIGDVQINKGSFISYASVSR 73          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V +++FV P+A +IGDV +G+G  +     LRGD   I V  G NIQDN ++H            T +G++  + HSA+LHGC +   A VGM A  + G
Sbjct:   11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQ------DTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDG 106          
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P +   AF+A +A+I GDV +G  SSIW+  V+RGDV    +G+  NIQD S +H + +          I D+ T+ H   LH   +   A +GMG+  L G
Sbjct:   10 PDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNK------TLLIEDDATIGHQVTLHSAVIRKNALIGMGSIILDG 105          
The following BLAST results are available for this feature:
BLAST of CF504664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
Y2881_DICDI2.900e-2944.60Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
Y304_METJA4.641e-1946.00Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
Y3753_PSEAE8.752e-1844.33Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
YRDA_SHIFL9.677e-1741.51Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI9.677e-1741.51Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
UMP8_ARATH1.825e-1542.16Uncharacterized protein At3g48680, mitochondrial O... [more]
UMP7_ARATH1.825e-1542.16Uncharacterized protein At5g63510, mitochondrial O... [more]
UMP6_ARATH4.495e-1450.00Uncharacterized protein At1g47420, mitochondrial O... [more]
PAAY_ECOLI3.805e-1339.22Phenylacetic acid degradation protein paaY OS=Esch... [more]
YTOA_BACSU6.491e-1337.25Uncharacterized transferase ytoA OS=Bacillus subti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-153 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504664 ID=CF504664; Name=CF504664; organism=Citrus sinensis; type=EST; length=526bp
TCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAA
AGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTT
CTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCC
AAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATG
AACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCC
AAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTT
GGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCA
GGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCT
AAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTATGCC
ATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGC
ATGGGAGCACACTACTTGATGGGGTT
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