CF504665

Overview
NameCF504665
Unique NameCF504665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7824 contig Csv1_Contig7824:111..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.249e-23
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 471
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDP 283          
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.131e-23
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 471
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P
Sbjct:  178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDP 283          
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.634e-23
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 471
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDP 283          
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.169e-21
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 471
            L+  +    + S LEG    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P
Sbjct:  157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP 262          
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 465
            LL  +      + LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of CF504665 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.892e-17
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  154 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 465
            LL++ G +V +  L GK   LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +
Sbjct:   14 LLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          
The following BLAST results are available for this feature:
BLAST of CF504665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE1.249e-2346.23Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN2.131e-2346.23Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN3.634e-2345.28Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_XENLA1.169e-2144.34Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_DANRE5.802e-2145.19Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
TYPX_TRYBB3.892e-1742.31Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-154 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504665 ID=CF504665; Name=CF504665; organism=Citrus sinensis; type=EST; length=498bp
AAAAAAAAGGAGAGTGATGAGAAATGAAGTGAGGTTGGAGGAAGACTAGG
AGCAGCCTGATGACGACAAATGGAAGCCTCTATCTCTGAGCATCAGAAGA
TCTCAACCTCATCAAGATTTTCAAGCCTCTTGGCCTCTAAAGATCGTGAC
TATCTTCTCAATCAACATGGCACTCAGGTGAAAGTCTCTGATCTTGAAGG
CAAGGTCACAGCCCTTTACTTCTCAGCTAACTGGTATCCGCCGTGTGGAA
ACTTCACCGGAGTTCTTGTTGACGTTTACGAAGAGCTGAGGAACAATGGA
TCCGATTTTGAGGTTGTCTTTGTGTCATCTGATGAAGACTTGAATGCCTT
CAACAACTACCGTGCATGCATGCCATGGCTAGCAGTTCCATATTCGGATT
TGGAAACAAAGAAGGCCTTGAACCGAAAATTTGACATCGAAGGCATTCCT
TGCTTGGTTGTGTTGCAACCTTATGATGATAAAGATGATGCAACATTG
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