CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig808 contig Csv1_Contig808:1..349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.421e-41
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            K+VADRYLKREVLGEGTYGVV+KA+DTKTG TVAIKKIRLGK KEGVNFTALREIKLLKELK  +IIELIDAFP+KGNLHLVFEFMETDLE VI
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVI 106          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.856e-41
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            KKVADRYLKREVLG+GTYGVV+KA DTK G+TVAIKKIRLGK+KEGVN TALREIKLLKELK PHIIELIDAFPHK NLH+VFEFMETDLE VI
Sbjct:    5 KKVADRYLKREVLGQGTYGVVFKATDTKNGETVAIKKIRLGKEKEGVNVTALREIKLLKELKHPHIIELIDAFPHKENLHIVFEFMETDLEAVI 98          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.054e-41
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            K+VADRYLKREVLGEGTYGVV+KA DTKTG TVAIKKIRLGK KEGVNFTALREIKLLKELK  +IIELIDAFP+KGNLHLVFEFMETDLE VI
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKADDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVI 106          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.501e-40
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            KKVADRYLK+EVLG+GTYGVV+KA DTKT QTVAIKKIRLGKQ+EGVN TALREIK+LKELK PHII LIDAFPHK NLHLVFEFMETDLE VI
Sbjct:    6 KKVADRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVI 99          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.623e-39
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            DRYL+R++LGEGTYGVVYKA DTKTG+TVA+KKIRLG QKEGVNFTALREIKLLKEL  PHI+ELIDAFPH G+LHLVFE+M+TDLE VI
Sbjct:   11 DRYLRRQILGEGTYGVVYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKELNHPHIVELIDAFPHDGSLHLVFEYMQTDLEAVI 100          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.579e-24
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQ---KEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            K  A RY K + LGEG +  VYKA D  T Q VAIKKI+LG +   K+G+N TALREIKLL+EL  P+II L+DAF HK N+ LVF+FMETDLE +I
Sbjct:    6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII 102          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.579e-24
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQ---KEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            K  A RY K + LGEG +  VYKA D  T Q VAIKKI+LG +   K+G+N TALREIKLL+EL  P+II L+DAF HK N+ LVF+FMETDLE +I
Sbjct:    6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII 102          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_RAT (Cell division protein kinase 7 (Fragment) OS=Rattus norvegicus GN=Cdk7 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.746e-23
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 2
Query:   77 ADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQ---KEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            A+R  K + LGEG +  VYKA D  T Q VAIKKI+LG +   K+G+N TALREIKLL+EL  P+II L+DAF HK N+ LVF+FMETDLE +I
Sbjct:    1 ANRNEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII 94          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_XENLA (Cell division protein kinase 7 OS=Xenopus laevis GN=cdk7 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.633e-23
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 2
Query:   77 ADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKE---GVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            A +Y K + LGEG +  VYKA D  T + VAIKKI+LG + E   G+N TALREIKLL+EL  P+II L+DAF HK N+ LVF+FMETDLE +I
Sbjct:   15 AKQYEKLDFLGEGQFATVYKARDKNTDRIVAIKKIKLGHRAEANDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII 108          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.640e-21
Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            DRY + ++LGEGTYGVVY+A+D  TGQ VA+KK+RL +  EG+  TALRE+ +L+E+  P+I+ L+D     G L+L+FE+++ DL+  +
Sbjct:   21 DRYNRMDILGEGTYGVVYRAVDRATGQIVALKKVRLDRTDEGIPQTALREVSILQEIHHPNIVNLLDVICADGKLYLIFEYVDHDLKKAL 110          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDKD1_ORYSJ1.421e-4189.36Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ARATH1.856e-4188.30Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]
CDKD1_ORYSI7.054e-4189.36Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD3_ARATH3.501e-4087.23Cyclin-dependent kinase D-3 OS=Arabidopsis thalian... [more]
CDKD2_ARATH8.623e-3983.33Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
CDK7_MOUSE1.579e-2460.82Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN1.579e-2460.82Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK7_RAT1.746e-2360.64Cell division protein kinase 7 (Fragment) OS=Rattu... [more]
CDK7_XENLA6.633e-2359.57Cell division protein kinase 7 OS=Xenopus laevis G... [more]
CC2H3_TRYBB3.640e-2148.89Cell division control protein 2 homolog 3 OS=Trypa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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