CF504674
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAFSPTT+N+GRG G Sbjct: 186 NICETIVWKAFSPTTVNTGRGMEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3) HSP 1 Score: 129.798 bits (325), Expect = 9.553e-37 Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S GQ YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294 HSP 2 Score: 44.669 bits (104), Expect = 9.553e-37 Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKAF PTT+N+GRG G Sbjct: 186 NICETIVWKAFGPTTVNTGRGTEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.244e-36 Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S GQ +YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294 HSP 2 Score: 43.5134 bits (101), Expect = 1.244e-36 Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WKA SPTTIN+GRG G Sbjct: 186 NICETIVWKASSPTTINTGRGTEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.344e-35 Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 3 Query: 69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 EFEGAVIALFHLL T+ +KV ALREAFYR NLPN+ NL AT+LVF IV+YFQGF+V LP++S GQ +YPIKLFYTSN+PIILQ Sbjct: 208 EFEGAVIALFHLLATRSDKVRALREAFYRPNLPNLMNLSATILVFGIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294 HSP 2 Score: 43.1282 bits (100), Expect = 1.344e-35 Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 Query: 2 NICESIIWKAFSPTTINSGRGA*IRG 79 NICE+I+WK+FSP T+N+GRG G Sbjct: 186 NICETIVWKSFSPATVNTGRGTEFEG 211
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.277e-34 Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 3 Query: 27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329 K +P +V EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLPNITNLLATVL+F++V+YFQGF+V LPV+S GQQG YPIKLFYTSN+PIILQ Sbjct: 195 KTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQ 295 The following BLAST results are available for this feature:
BLAST of CF504674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504674 ID=CF504674; Name=CF504674; organism=Citrus sinensis; type=EST; length=330bpback to top |