CF504674

Overview
NameCF504674
Unique NameCF504674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length330
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.630e-37
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 45.8246 bits (107), Expect = 5.630e-37
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAFSPTT+N+GRG    G
Sbjct:  186 NICETIVWKAFSPTTVNTGRGMEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 9.553e-37
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 44.669 bits (104), Expect = 9.553e-37
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKAF PTT+N+GRG    G
Sbjct:  186 NICETIVWKAFGPTTVNTGRGTEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.244e-36
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ  +YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 43.5134 bits (101), Expect = 1.244e-36
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WKA SPTTIN+GRG    G
Sbjct:  186 NICETIVWKASSPTTINTGRGTEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.344e-35
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 3
Query:   69 EFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            EFEGAVIALFHLL T+ +KV ALREAFYR NLPN+ NL AT+LVF IV+YFQGF+V LP++S    GQ  +YPIKLFYTSN+PIILQ
Sbjct:  208 EFEGAVIALFHLLATRSDKVRALREAFYRPNLPNLMNLSATILVFGIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294          

HSP 2 Score: 43.1282 bits (100), Expect = 1.344e-35
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2
Query:    2 NICESIIWKAFSPTTINSGRGA*IRG 79
            NICE+I+WK+FSP T+N+GRG    G
Sbjct:  186 NICETIVWKSFSPATVNTGRGTEFEG 211          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.277e-34
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 3
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P   +V    EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLPNITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQ
Sbjct:  195 KTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQ 295          
The following BLAST results are available for this feature:
BLAST of CF504674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
S61A1_RAT5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_CANFA5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_BOVIN5.630e-3770.11Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_BOVVA9.553e-3771.26Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A2_PONAB1.244e-3672.41Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HALRO1.344e-3572.41Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DICDI1.277e-3470.30Protein transport protein Sec61 subunit alpha OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-163 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504674 ID=CF504674; Name=CF504674; organism=Citrus sinensis; type=EST; length=330bp
TAACATTTGTGAAAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAA
ACAGTGGCCGGGGAGCCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCA
TCTGCTGATAACCAAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCT
ATCGGCAAAACCTTCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTA
TTCCTTATTGTTGTCTACTTTCAAGGGTTCAAAGTGGTGTTGCCCGTGAG
ATCAAAAAATGGCTGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCT
ACACATCCAACATGCCTATCATTCTCCAAT
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