CF504684

Overview
NameCF504684
Unique NameCF504684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7319 contig Csv1_Contig7319:750..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   45 ESRLVIKIPKQFNPEHXXXXXXXLSVP-KVSDETSEVGPTQAV---------------RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            +SRL+I+IPKQF  +H            K++  +S  G    V               RKCMHCE+TKTPQWR GPMGPKTLCNACGVRYKS
Sbjct:  171 DSRLIIRIPKQFLSDHNKMINKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKS 262          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.702e-13
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 3
Query:  141 TSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            + E+   Q  RKC HC + KTPQWRAGPMG KTLCNACGVRYKS
Sbjct:  239 SGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKS 282          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.141e-13
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 3
Query:  135 DETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            D   + G +   R+C+HC   KTPQWR GPMGPKTLCNACGVRYKS
Sbjct:  185 DMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKS 230          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.020e-13
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  168 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            VRKC HCE TKTPQWR GP GPKTLCNACGVR++S
Sbjct:  219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRS 253          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.368e-12
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 3
Query:  171 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            R+C+HC   KTPQWR GPMGPKTLCNACGVRYKS
Sbjct:  219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS 252          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.787e-12
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 3
Query:  132 SDETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            S ET+E G    +R+C HC   KTPQWR GP+GPKTLCNACGVR+KS
Sbjct:  169 SSETTEGG---GMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKS 212          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.334e-12
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 3
Query:  171 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            RKC HC   KTPQWRAGP GPKTLCNACGVRYKS
Sbjct:  194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKS 227          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 3
Query:  171 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            R+C HC   KTPQWR GP+GPKTLCNACGVRYKS
Sbjct:  158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS 191          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   75 QFNPEHXXXXXXXLSVPKVSDETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            QF  E          V K + +T     TQ  R+C HC + KTPQWRAGP+G KTLCNACGVRYKS
Sbjct:  190 QFLDEPMTKTQKKKKVWKNAGQTQTQTQTQT-RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKS 254          
BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.507e-11
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  168 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            VR C HCE   TPQWR GP GPKTLCNACGVR+KS
Sbjct:  217 VRICTHCETITTPQWRQGPSGPKTLCNACGVRFKS 251          
The following BLAST results are available for this feature:
BLAST of CF504684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GAT10_ARATH1.412e-1750.00GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GAT14_ARATH4.702e-1370.45GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GAT11_ARATH6.141e-1365.22GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GATA6_ARATH8.020e-1382.86GATA transcription factor 6 OS=Arabidopsis thalian... [more]
GAT13_ARATH1.368e-1282.35GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GATA2_ARATH1.787e-1265.96GATA transcription factor 2 OS=Arabidopsis thalian... [more]
GATA1_ARATH2.334e-1285.29GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GATA4_ARATH8.867e-1279.41GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GATA9_ARATH1.158e-1153.03GATA transcription factor 9 OS=Arabidopsis thalian... [more]
GATA5_ARATH7.507e-1177.14GATA transcription factor 5 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-173 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504684 ID=CF504684; Name=CF504684; organism=Citrus sinensis; type=EST; length=273bp
GCTTAATTGCCCCCAAGGCCTCATCTGATTCTGAGAATTTTGCAGAGTCT
CGCCTTGTGATTAAAATACCAAAGCAATTCAACCCGGAGCACAAGAAGAA
AAAGAAAATCAAATTGTCAGTTCCAAAAGTTTCCGATGAGACTAGTGAAG
TTGGGCCAACACAAGCCGTTAGGAAATGCATGCATTGCGAGATAACGAAG
ACGCCTCAATGGAGAGCAGGGCCAATGGGGCCAAAAACCCTTTGCAATGC
ATGCGGTGTTCGCTATAAGTCTT
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