CF504685

Overview
NameCF504685
Unique NameCF504685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKLXXXXXXXXXXXXXXXMLIQLGRYL 248
            +IAEPET+ +RIKPE+EFLILASDGLWDKV+NQEA+D+ RP+C  ++ P  + ACKKL               ++IQL  +L
Sbjct:  308 VIAEPETRTLRIKPEFEFLILASDGLWDKVTNQEAVDVVRPYCVGVENPMTLSACKKLAELSVKRGSLDDISLIIIQLQNFL 389          
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.596e-19
Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAP-EPMLACKKLXXXXXXXXXXXXXXXMLIQL 236
            II+EPE  I+RI P++EFLILASDGLWDKVSNQEA+DIARPFC+  D   +P+LACKKL               MLIQL
Sbjct:  298 IISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIARPFCKGTDQKRKPLLACKKLVDLSVSRGSLDDISVMLIQL 376          
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.351e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKLXXXXXXXXXXXXXXXMLIQLGRYL 248
            +IAEPETKI RI+ ++EFLILASDGLWDKVSNQEA+DIARP C   + P  + ACKKL               MLI L +++
Sbjct:  315 VIAEPETKISRIEHDHEFLILASDGLWDKVSNQEAVDIARPLCLGTEKPLLLAACKKLVDLSASRGSSDDISVMLIPLRQFI 396          
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C53_ARATH (Putative protein phosphatase 2C 53 OS=Arabidopsis thaliana GN=At4g08260 PE=5 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.430e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKLXXXXXXXXXXXXXXXMLIQLGRYL 248
            +IAEPETKI R++ ++EFLILAS GLWDKVSNQEA+DIARPFC   + P  + ACKKL               MLI L +++
Sbjct:  131 VIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPLLLAACKKLVDLSASRGSFDDISVMLIPLRQFV 212          
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C45_ARATH (Putative protein phosphatase 2C-like protein 45 OS=Arabidopsis thaliana GN=At3g27140 PE=5 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.413e-17
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKLXXXXXXXXXXXXXXXMLIQL 236
            +IAEPETKI R++ ++EFLILAS GLWDKVSNQEA+DIARPFC   + P  + ACKKL               MLI L
Sbjct:  111 VIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPLLLAACKKLVDLSASRGSFDDISVMLIPL 188          
BLAST of CF504685 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.014e-12
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    3 IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKLXXXXXXXXXXXXXXXMLIQLGRY 245
            ++++P+T  + +  + EFLILASDGLWDKV NQEA+DIARP   S D    M AC++L               ++IQL ++
Sbjct:  309 VVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGSTDDISIVIIQLQQF 389          
The following BLAST results are available for this feature:
BLAST of CF504685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2C30_ARATH1.988e-1952.44Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
P2C02_ARATH2.596e-1960.76Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C25_ARATH8.351e-1854.88Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C53_ARATH2.430e-1753.66Putative protein phosphatase 2C 53 OS=Arabidopsis ... [more]
P2C45_ARATH5.413e-1756.41Putative protein phosphatase 2C-like protein 45 OS... [more]
P2C32_ORYSJ4.014e-1241.98Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-174 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504685 ID=CF504685; Name=CF504685; organism=Citrus sinensis; type=EST; length=298bp
GGATCATTGCCGAGCCAGAGACTAAAATCATTCGAATCAAACCCGAATAT
GAGTTCCTAATCTTAGCATCTGATGGCCTCTGGGATAAGGTCAGTAATCA
AGAAGCAATTGACATTGCTCGCCCTTTTTGCCAAAGCATTGATGCACCAG
AACCAATGTTAGCGTGTAAGAAGCTTGTAGATCTCTCTGTTTCACGGGGC
TCAGTTGATGATGTTAGTGTGATGCTGATTCAACTGGGGCGCTATCTTTG
AATCATCCCAAAACAACATACAGTAGAAAATTGAACTAACGCCGAGGC
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