CF504694

Overview
NameCF504694
Unique NameCF504694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.618e-21
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 2
Query:    2 IYDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNH 190
            +Y K WRFD EGLP DLI+RG+A ED  A HG++L I DYP+ANDGL LWDA+K+WVT+YV H
Sbjct:  625 VYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKH 687          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.292e-20
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            YDK WRFD E LP DL+RRG+A EDP A HGLKL IEDYP+ANDGL +WDA+K WV  YV
Sbjct:  653 YDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYV 712          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.292e-20
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            Y  HWRFD EGLP DLIRRG+AVED   PHG++L IEDYPYANDGL LW A++ WV +YV
Sbjct:  645 YRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYV 704          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.106e-20
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHLLSRS 205
            Y   WRFD EGLP DLIRRG+AV DP  PHGLKL +EDYPYANDGL LW A++ WV  YV    + S
Sbjct:  657 YKNKWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANS 723          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.710e-20
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            YDK WRFD E LP DL+RRG+A EDP A HGL+L IEDYP+ANDGL +WDA+K WV  YV
Sbjct:  670 YDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYV 729          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.630e-19
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            Y   WRFD EGLP DLIRRG+A+ D   PHGLKL IEDYPYANDGL LW A++ WV  YV
Sbjct:  650 YKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYV 709          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.630e-19
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K W F ++GLP DLI+RG+AV+DP +PHG++L IEDYPYA+DGL++W A+K WV  YVN
Sbjct:  599 KDWVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVN 657          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.258e-18
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K+W F ++ LP DL++RG+A+EDP APHGL+L IEDYPYA DGL++WDA+K WV  YV+
Sbjct:  598 KNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVS 656          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.258e-18
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K W F ++ LP DL++RG+AV+DP APHG++L IEDYPYA+DGL++WDA+K WV  YV+
Sbjct:  586 KDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVS 644          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.643e-18
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K W   ++ LP DL++RG+AV+DP APHG+KL IEDYPYA+DGL++WDA+K WV  YV
Sbjct:  480 KDWSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYV 537          
The following BLAST results are available for this feature:
BLAST of CF504694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX2_ARATH4.618e-2166.67Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ2.292e-2071.67Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX6_ORYSJ2.292e-2070.00Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH5.106e-2064.18Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ8.710e-2070.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX3_ARATH9.630e-1968.33Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX1_LENCU9.630e-1962.71Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXX_SOYBN1.258e-1862.71Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX4_SOYBN1.258e-1861.02Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXB_PHAVU1.643e-1862.07Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-184 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504694 ID=CF504694; Name=CF504694; organism=Citrus sinensis; type=EST; length=217bp
CATCTATGACAAGCACTGGAGGTTTGACAATGAAGGACTCCCCAAGGACC
TTATTAGGAGGGGAATAGCTGTTGAAGATCCAAAAGCTCCTCATGGCCTT
AAGCTAAACATCGAAGACTACCCATATGCCAACGATGGGCTCGATCTCTG
GGATGCCTTAAAACAATGGGTTACTAACTATGTGAACCACCTATTATCCC
GATCCAAGCCTTGTAGA
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