CF504696

Overview
NameCF504696
Unique NameCF504696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:823..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.000e-24
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   66 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVER
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVER 74          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.888e-23
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 3
Query:   96 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVER
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVER 64          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.888e-23
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   66 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVER
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVER 74          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 1.388e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 3
Query:   72 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVER
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVER 71          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.388e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 3
Query:   72 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVER
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVER 71          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.368e-17
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  117 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVER
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVER 71          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.535e-16
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   66 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVER
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVER 95          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.419e-16
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   72 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVER
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVER 71          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.617e-16
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3
Query:  117 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVER
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVER 77          
BLAST of CF504696 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  120 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVER 287
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ER
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIER 80          
The following BLAST results are available for this feature:
BLAST of CF504696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RS52_ARATH2.000e-2472.9740S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_CICAR2.888e-2378.1340S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH2.888e-2368.9240S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN1.388e-1759.7240S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.388e-1759.7240S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE2.368e-1768.4240S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5A_DROME1.535e-1658.1140S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_RAT3.419e-1656.9440S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_PODCA7.617e-1664.9140S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_NEUCR1.697e-1562.5040S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-186 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504696 ID=CF504696; Name=CF504696; organism=Citrus sinensis; type=EST; length=288bp
GGCAGCCGATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAA
GCTCTTCAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCC
ATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGG
ATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCG
GCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAA
GCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGC
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