CF510164

Overview
NameCF510164
Unique NameCF510164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.524e-27
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1
Query:   85 GLVNRIQRACTVLGDYGG---DSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            GLVNRIQRACTVLGDYGG    +A  +LWEALP+VAV+GGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL
Sbjct:    9 GLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 80          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.990e-27
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVN+IQRACT LGD+G  SALPTLW++LP++AV+GGQSSGKSSVLESIVG+DFLPRGSGIVTRRPLVL
Sbjct:    7 LVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVL 74          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.599e-27
Identity = 56/68 (82.35%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVN+IQRACT LGD+G +SALPTLW++LP++AV+GGQSSGKSSVLES+VG+DFLPRGSGIVTRRPLVL
Sbjct:    7 LVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVL 74          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.599e-27
Identity = 56/68 (82.35%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVN+IQRACT LGD+G +SALPTLW++LP++AV+GGQSSGKSSVLES+VG+DFLPRGSGIVTRRPLVL
Sbjct:    7 LVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVL 74          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.599e-27
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDS-ALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            L+N IQRACTV+GD+GGDS AL +LWEALPSVAV+GGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL
Sbjct:    7 LINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 75          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVN+IQRACT LGD+G  S+LPTLW++LP++AV+GGQSSGKSSVLES+VG+DFLPRG+GIVTRRPLVL
Sbjct:    7 LVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVL 74          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.874e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1
Query:   85 GLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            GL+N+IQRACTVLGD+GG+    +LWEALP+VAV+GGQSSGKSSVLES+VGRDFLPRGSGIVTRRPLVL
Sbjct:    9 GLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVL 75          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVNR+Q A + LG         +    LP +AV+GGQS+GKSSVLE+ VGRDFLPRGSGIVTRRPLVL
Sbjct:   12 LVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVNR+Q A + LG         +    LP +AV+GGQS+GKSSVLE+ VGRDFLPRGSGIVTRRPLVL
Sbjct:   12 LVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LVNR+Q A + LG         +    LP +AV+GGQS+GKSSVLE+ VGRDFLPRGSGIVTRRPLVL
Sbjct:   12 LVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71          
The following BLAST results are available for this feature:
BLAST of CF510164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DRP1E_ARATH1.524e-2786.11Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1A_ARATH1.990e-2783.82Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
SDLCA_SOYBN2.599e-2782.35Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN2.599e-2782.35Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1D_ARATH2.599e-2788.41Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.200e-2679.41Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.874e-2682.61Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DYN3_RAT8.673e-1563.24Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE8.673e-1563.24Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN3_HUMAN8.673e-1563.24Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-679 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510164 ID=CF510164; Name=CF510164; organism=Citrus sinensis; type=EST; length=291bp
TCAGTTCAAATTCGAAAGAACAAACCGGTAGCCTTTTGGAAGAAAGAGAA
ATTGAAATAATGGCAACAATGGAGAGCTTGATATGGGTTAGTTAACAGGA
TACAGAGAGCGTGTACAGTACTCGGCGACTACGGCGGTGACTCTGCTTTG
CCTACACTTTGGGAGGCTCTTCCCTCTGTTGCCGTTATCGGTGGCCAGAG
TTCTGGAAAGTCGTCGGTGCTGGAGAGCATTGTCGGACGAGATTTTCTTC
CTCGAGGATCAGGTATTGTGACAAGGAGGCCTTTGGTGCTG
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