CF510166

Overview
NameCF510166
Unique NameCF510166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: BR44_HUMAN (Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   48 RETETAESMAASKLQALWNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            R  +  E M   KL+ L+NHPAGP+T        V FWAP  KWG+  A +AD ++P E LS  Q   +  TG IWSRYS VI P
Sbjct:   15 RLLDKVELMLPEKLRPLYNHPAGPRT--------VFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIP 91          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: BR44_RAT (Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   48 RETETAESMAASKLQALWNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            R  +  E +   KL+ L+NHPAGP+T        V FWAP  KWG+  A +AD ++P E LS  Q   +  TG IWSRYS VI P
Sbjct:   15 RLMDKVELLLPKKLRPLYNHPAGPRT--------VFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: BR44_MOUSE (Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   48 RETETAESMAASKLQALWNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            R  +  E +   KL+ L+NHPAGP+T        V FWAP  KWG+  A +AD ++P E LS  Q   +  TG IWSRYS VI P
Sbjct:   15 RLMDKVELLLPKKLRPLYNHPAGPRT--------VFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: BR44_PONAB (Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 3
Query:   48 RETETAESMAASKLQALWNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            R  +  E M   KL+ L+NHPAGP+T        V FWAP  K G+  A +AD ++P E LS  Q   +  TG IWSRYS VI P
Sbjct:   15 RLLDKVELMLPEKLRPLYNHPAGPRT--------VFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIP 91          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: YAI9_SCHPO (UPF0041 protein C24B11.09 OS=Schizosaccharomyces pombe GN=SPAC24B11.09 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   72 MAASKLQALWNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            M  +  +  WNHPAGPKT        VHFWAP  KW + ++ I D+++ PE LS  Q  A+  TG IW+R+S ++ P
Sbjct:    1 MFRAGFKRFWNHPAGPKT--------VHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRP 69          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: YXX3_CAEEL (UPF0041 protein F53F10.3 OS=Caenorhabditis elegans GN=F53F10.3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 3
Query:   99 WNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITPV 305
            WNH AGPKT        V FWAPT KW +  A +AD ++P + LS  Q  A+  TG IW+RY  VITP+
Sbjct:   31 WNHAAGPKT--------VFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPI 91          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 3
Query:   99 WNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            WN   GPKT        VHFWAPT KWG+  A + D  +P E +S  Q +++  T LIW+R+S VI P
Sbjct:   14 WNSETGPKT--------VHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKP 73          
BLAST of CF510166 vs. ExPASy Swiss-Prot
Match: YHW2_YEAST (UPF0041 protein YHR162W OS=Saccharomyces cerevisiae GN=YHR162W PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3
Query:   99 WNHPAGPKTINNSCIVAVHFWAPTFKWGISIANIADFSKPPENLSYPQQVAVTCTGLIWSRYSTVITP 302
            W    GPKT        VHFWAPT KWG+  A  +D  +P E +S  Q +++  T LIW+R+S VI P
Sbjct:   14 WQSETGPKT--------VHFWAPTLKWGLVFAGFSDMKRPVEKISGAQNLSLLSTALIWTRWSFVIKP 73          
The following BLAST results are available for this feature:
BLAST of CF510166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BR44_HUMAN2.269e-1547.06Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=... [more]
BR44_RAT5.056e-1545.88Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=... [more]
BR44_MOUSE5.056e-1545.88Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=... [more]
BR44_PONAB9.535e-1445.88Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=... [more]
YAI9_SCHPO1.245e-1342.86UPF0041 protein C24B11.09 OS=Schizosaccharomyces p... [more]
YXX3_CAEEL1.798e-1249.28UPF0041 protein F53F10.3 OS=Caenorhabditis elegans... [more]
FMP43_YEAST2.597e-1145.59UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
YHW2_YEAST9.867e-1144.12UPF0041 protein YHR162W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510166 ID=CF510166; Name=CF510166; organism=Citrus sinensis; type=EST; length=466bp
AAAACTTACACAAACAAACACGTGAAGAGTCGCATTCGCACGCATTGAGA
GAGACAGAGACAGCTGAATCTATGGCAGCGTCAAAGCTTCAAGCTCTGTG
GAACCACCCTGCCGGTCCCAAAACCATTAACAACAGCTGCATCGTTGCAG
TTCACTTTTGGGCTCCTACTTTTAAATGGGGCATCAGCATAGCAAATATT
GCTGACTTCTCTAAACCACCAGAAAATCTTTCCTATCCCCAGCAAGTAGC
GGTTACATGCACTGGACTGATCTGGTCACGCTACAGCACTGTAATCACTC
CGGTATGTTTGATTTGTATGTAAGATCACAATTCACAAGCTCTTGAAGGA
TGAAAATAACACAGAAACAGAAACTAAGATTTCACTAATTTCACATTTTA
GTTCCCATTTTCCTTTTGCTAGAATCTAGATCCCCTTTGGTAAGAATTTC
TTTGTTTCACGATTCT
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